Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 5.1e-135 484.6 270 100.0
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 7.7e-67 258.1 211 68.2
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 4.7e-56 222.2 211 62.1
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 1.7e-53 213.8 211 57.3
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 5.4e-44 182.2 211 50.7
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.3e-42 177.6 215 51.2
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 2.3e-42 176.8 212 51.4
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 5.0e-42 175.6 212 50.9
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 1.5e-41 174.1 207 50.7
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 9.5e-41 171.4 203 50.7
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 9.5e-41 171.4 214 49.1
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.6e-40 170.6 219 51.1
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 2.1e-40 170.2 210 49.0
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 2.0e-38 163.7 224 47.8
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 8.3e-37 158.3 223 46.2
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 5.9e-35 152.1 195 49.7
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 2.3e-34 150.2 181 50.3
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 6.6e-34 148.7 222 44.6
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.3e-33 146.0 223 43.5
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 5.6e-33 145.6 213 46.9
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.5e-33 144.8 224 43.3
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 1.6e-32 144.1 188 48.4
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 1.6e-32 144.1 199 46.7
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 5.2e-31 139.0 172 46.5
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 5.2e-31 139.0 165 48.5
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 6.8e-31 138.7 207 46.4
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 8.9e-31 138.3 209 42.6
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 7.5e-30 135.2 197 42.6
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.2e-29 133.7 168 49.4
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.2e-29 133.7 168 49.4
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.9e-29 133.3 196 45.9
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.9e-29 133.3 209 44.5
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.4e-28 131.0 196 45.4
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 3.2e-28 129.8 138 49.3
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 3.2e-28 129.8 138 49.3
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 4.1e-28 129.4 207 45.9
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 7.0e-28 128.6 136 50.0
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 1.0e-26 124.8 199 41.2
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.3e-26 124.4 188 43.1
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 2.3e-26 123.6 217 39.6
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 2.3e-26 123.6 141 48.9
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.6e-26 122.1 209 43.1
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 8.6e-26 121.7 159 44.0
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 1.8e-23 114.0 150 45.3
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.2e-23 112.5 171 42.7
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 8.9e-23 111.7 210 38.1
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 1.2e-22 111.3 239 37.2
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.5e-22 110.9 188 42.6
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.0e-22 110.5 127 52.0
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.6e-22 110.2 210 38.6
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 7.5e-22 108.6 207 37.7
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.1e-20 104.8 185 38.4
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 3.2e-20 103.2 180 41.7
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 3.5e-19 99.8 125 49.6
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 3.0e-18 96.7 138 42.8
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.9e-18 96.3 199 33.7
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 5.1e-18 95.9 203 36.0
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 4.0e-15 86.3 197 31.5
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 2.0e-14 84.0 138 40.6
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 8.4e-13 78.6 158 36.1
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 8.4e-13 78.6 224 30.4
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 3.2e-12 76.6 216 29.6
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 5.4e-12 75.9 184 31.0
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.2e-11 74.7 227 30.0
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 1.2e-11 74.7 124 39.5
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.1e-11 73.9 206 29.1
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.7e-11 73.6 160 31.2
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.7e-11 73.6 248 27.0
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.7e-11 73.6 227 29.5
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 3.5e-11 73.2 229 28.8
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 3.5e-11 73.2 229 28.8
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 3.5e-11 73.2 164 31.7
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.6e-11 72.8 229 28.8
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.0e-10 71.6 213 32.9
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.0e-10 71.6 202 29.7
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.7e-10 70.9 183 30.1
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.0e-10 70.1 191 27.2
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.9e-10 69.7 194 26.3
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 8.6e-10 68.6 167 30.5
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.5e-09 67.8 180 30.6
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.5e-09 67.8 201 26.4
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 2.5e-09 67.0 178 27.0
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 3.3e-09 66.6 171 28.7
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 3.3e-09 66.6 168 28.6
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 3.3e-09 66.6 191 24.6
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 4.3e-09 66.2 193 28.0
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 5.6e-09 65.9 147 29.9
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 7.3e-09 65.5 218 30.3
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 9.6e-09 65.1 167 28.1
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 9.6e-09 65.1 223 27.8
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.2e-08 64.7 211 29.4
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.2e-08 64.7 150 29.3
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 2.1e-08 63.9 217 24.4
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 2.1e-08 63.9 167 28.1
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.1e-08 63.9 175 29.7
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.8e-08 63.5 201 27.9
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.8e-08 63.5 157 29.9
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 2.8e-08 63.5 192 27.6
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 2.8e-08 63.5 238 25.6
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 2.8e-08 63.5 208 27.9
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.6e-08 63.2 167 31.1
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 3.6e-08 63.2 176 31.2
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 3.6e-08 63.2 177 27.1
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 4.7e-08 62.8 200 26.5
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 4.7e-08 62.8 233 24.5
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.1e-08 62.0 175 28.6
PSO017G2423 Papaver somniferum HOM05D047741 ORTHO05D002891 8.1e-08 62.0 76 51.3
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.1e-07 61.6 175 25.1
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.1e-07 61.6 169 27.2
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.1e-07 61.6 176 31.2
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.1e-07 61.6 176 26.1
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 1.1e-07 61.6 231 23.4
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 1.4e-07 61.2 175 26.3
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.4e-07 61.2 233 26.6
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 1.8e-07 60.8 154 27.3
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 2.4e-07 60.5 176 30.7
PSO675G3707 Papaver somniferum HOM05D047741 ORTHO05D002891 2.4e-07 60.5 76 50.0
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 3.1e-07 60.1 200 26.0
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.1e-07 60.1 213 26.8
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 3.1e-07 60.1 182 27.5
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 4.0e-07 59.7 199 27.1
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.0e-07 59.7 172 28.5
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.0e-07 59.7 196 27.0
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 4.0e-07 59.7 87 39.1
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 5.2e-07 59.3 162 29.0
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 8.9e-07 58.5 174 26.4
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.9e-07 58.5 196 25.0
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.2e-06 58.2 232 25.0
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 1.2e-06 58.2 222 23.9
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.5e-06 57.8 164 26.8
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.5e-06 57.8 166 27.7
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 2.0e-06 57.4 201 26.4
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.0e-06 57.4 196 26.5
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 2.0e-06 57.4 205 27.3
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.6e-06 57.0 196 26.5
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 3.4e-06 56.6 192 26.0
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 3.4e-06 56.6 205 24.9
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.4e-06 56.6 162 27.8
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 5.8e-06 55.8 171 26.9
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 5.8e-06 55.8 154 27.9
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.8e-06 55.8 185 27.0
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 7.6e-06 55.5 162 26.5
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 9.9e-06 55.1 169 29.6


User provided reference genes

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