Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0062100 Salix brachista HOM05D004254 ORTHO05D005184 9.5e-248 859.8 445 100.0
Sabra15G0059400 Salix brachista HOM05D004254 ORTHO05D005184 8.9e-238 826.6 442 97.1
Sabra15G0032200 Salix brachista HOM05D004254 ORTHO05D005184 6.4e-236 820.5 439 96.8
Sabra15G0031800 Salix brachista HOM05D004254 ORTHO05D005184 9.0e-230 800.0 421 98.1
Potri.015G037000 Populus trichocarpa HOM05D004254 ORTHO05D005184 2.3e-225 785.4 416 97.6
Manes.06G005200 Manihot esculenta HOM05D004254 ORTHO05D005184 1.1e-208 729.9 416 89.2
QL10p030432 Quercus lobata HOM05D004254 ORTHO05D005184 2.6e-205 718.8 415 87.2
GSVIVG01008461001 Vitis vinifera HOM05D004254 ORTHO05D005184 1.6e-202 709.5 416 86.8
Haze_18876 Corylus avellana HOM05D004254 ORTHO05D005184 3.5e-202 708.4 416 86.5
CSS0013925 Camellia sinensis var. sinensis HOM05D004254 ORTHO05D005184 7.9e-202 707.2 419 85.2
Prupe.5G234300 Prunus persica HOM05D004254 ORTHO05D005184 2.3e-201 705.7 423 84.4
Atru.chr9.1674 Acer truncatum HOM05D004254 ORTHO05D005184 6.7e-201 704.1 416 86.1
MD14G1237000 Malus domestica HOM05D004254 ORTHO05D005184 1.9e-200 702.6 423 83.9
Actinidia12362 Actinidia chinensis HOM05D004254 ORTHO05D005184 1.6e-199 699.5 423 83.5
Duzib084G0705 Durio zibethinus HOM05D004254 ORTHO05D005184 1.1e-198 696.8 423 83.9
Rhsim08G0126700 Rhododendron simsii HOM05D004254 ORTHO05D005184 1.4e-198 696.4 416 83.9
TWI81G0051 Tripterygium wilfordii HOM05D004254 ORTHO05D005184 2.4e-198 695.7 416 84.9
Hma1.2p1_0163F.1_g073050 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 9.0e-198 693.7 417 85.1
Thecc.03G057600 Theobroma cacao HOM05D004254 ORTHO05D005184 1.2e-197 693.3 423 83.9
CiPaw.15G144100 Carya illinoinensis HOM05D004254 ORTHO05D005184 3.4e-197 691.8 416 83.7
TAR629G2841 Trochodendron aralioides HOM05D004254 ORTHO05D005184 1.3e-196 689.9 423 83.2
Gohir.A03G092900 Gossypium hirsutum HOM05D004254 ORTHO05D005184 2.2e-196 689.1 422 82.7
COL.COLO4_06962 Corchorus olitorius HOM05D004254 ORTHO05D005184 2.9e-196 688.7 419 84.0
Nitab4.5_0001264g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 2.9e-196 688.7 419 83.5
Gohir.D02G121800 Gossypium hirsutum HOM05D004254 ORTHO05D005184 6.5e-196 687.6 423 82.5
PGR083G1460 Punica granatum HOM05D004254 ORTHO05D005184 1.9e-195 686.0 416 81.7
vmacro17774 Vaccinium macrocarpon HOM05D004254 ORTHO05D005184 1.9e-195 686.0 421 81.2
Gorai.005G132300 Gossypium raimondii HOM05D004254 ORTHO05D005184 4.2e-195 684.9 423 82.5
CANSAT21G0981 Cannabis sativa HOM05D004254 ORTHO05D005184 7.2e-195 684.1 416 81.2
Lj2g0021015 Lotus japonicus HOM05D004254 ORTHO05D005184 2.7e-194 682.2 416 81.5
Glyma.07G103000 Glycine max HOM05D004254 ORTHO05D005184 1.0e-193 680.2 416 82.2
RcHm_v2.0_Chr7g0178241 Rosa chinensis HOM05D004254 ORTHO05D005184 1.0e-193 680.2 416 82.7
Lj5A159T43 Lonicera japonica HOM05D004254 ORTHO05D005184 1.4e-193 679.9 423 81.8
CAN.G843.50 Capsicum annuum HOM05D004254 ORTHO05D005184 3.9e-193 678.3 416 82.2
FvH4_5g17450 Fragaria vesca HOM05D004254 ORTHO05D005184 3.9e-193 678.3 416 82.2
Ca_25341_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 6.7e-193 677.6 415 81.0
Ca_25342_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 6.7e-193 677.6 415 81.0
FAN04G2545 Fragaria x ananassa HOM05D004254 ORTHO05D005184 6.7e-193 677.6 416 82.5
Sopen03g037600 Solanum pennellii HOM05D004254 ORTHO05D005184 1.5e-192 676.4 419 82.6
Phvul.004G150100 Phaseolus vulgaris HOM05D004254 ORTHO05D005184 1.3e-191 673.3 416 80.5
Solyc03g118640.3 Solanum lycopersicum HOM05D004254 ORTHO05D005184 1.7e-191 672.9 419 82.3
TPR.G8645 Trifolium pratense HOM05D004254 ORTHO05D005184 6.3e-191 671.0 416 80.3
Lalb_Chr14g0370611 Lupinus albus HOM05D004254 ORTHO05D005184 1.8e-190 669.5 416 80.5
FAN13G1575 Fragaria x ananassa HOM05D004254 ORTHO05D005184 3.1e-190 668.7 444 77.7
Lsat_1_v5_gn_8_141761 Lactuca sativa HOM05D004254 ORTHO05D005184 4.1e-190 668.3 419 80.2
Medtr6g069660 Medicago truncatula HOM05D004254 ORTHO05D005184 1.5e-189 666.4 416 79.3
VMungo0464G0766 Vigna mungo HOM05D004254 ORTHO05D005184 2.0e-189 666.0 416 80.0
FAN18G0674 Fragaria x ananassa HOM05D004254 ORTHO05D005184 5.9e-189 664.5 444 77.0
PSO017G0085 Papaver somniferum HOM05D004254 ORTHO05D005184 1.3e-188 663.3 416 80.3
DCAR_012097 Daucus carota HOM05D004254 ORTHO05D005184 2.9e-188 662.1 416 80.5
HanXRQChr17g0559181 Helianthus annuus HOM05D004254 ORTHO05D005184 2.9e-188 662.1 420 80.2
Migut.I00270 Erythranthe guttata HOM05D004254 ORTHO05D005184 3.8e-188 661.8 419 79.7
Aqoxy3G00045 Aquilegia oxysepala HOM05D004254 ORTHO05D005184 5.0e-188 661.4 423 79.7
Eucgr.B00991 Eucalyptus grandis HOM05D004254 ORTHO05D005184 1.9e-187 659.4 416 80.3
MBI12_g17290_MAGBIO Magnolia biondii HOM05D004254 ORTHO05D005184 1.9e-187 659.4 415 81.7
Psat1g030920 Pisum sativum HOM05D004254 ORTHO05D005184 4.2e-187 658.3 416 78.8
PSO478G1825 Papaver somniferum HOM05D004254 ORTHO05D005184 2.7e-186 655.6 416 79.6
SGA_v2.0_scaffold28G11766 Striga asiatica HOM05D004254 ORTHO05D005184 4.7e-186 654.8 423 77.1
MSTRG.11304 Avicennia marina HOM05D004254 ORTHO05D005184 1.0e-185 653.7 423 78.5
ECA233G1972 Erigeron canadensis HOM05D004254 ORTHO05D005184 1.0e-185 653.7 419 78.8
arahy.Tifrunner.gnm1.ann1.QLLT1A Arachis hypogaea HOM05D004254 ORTHO05D005184 1.8e-185 652.9 420 79.0
arahy.Tifrunner.gnm1.ann1.FFN37F Arachis hypogaea HOM05D004254 ORTHO05D005184 3.9e-185 651.7 416 79.6
Sed0023132 Sechium edule HOM05D004254 ORTHO05D005184 6.7e-185 651.0 416 77.2
Cc04_g06160 Coffea canephora HOM05D004254 ORTHO05D005184 8.8e-185 650.6 419 78.0
SalBow7G0492 Salvia bowleyana HOM05D004254 ORTHO05D005184 8.8e-185 650.6 419 77.1
Sc10g0009220 Simmondsia chinensis HOM05D004254 ORTHO05D005184 8.8e-185 650.6 416 77.9
CsaV3_1G004440 Cucumis sativus L. HOM05D004254 ORTHO05D005184 2.4e-182 642.5 416 75.7
MELO3C017366.2 Cucumis melo HOM05D004254 ORTHO05D005184 1.2e-181 640.2 416 75.5
unitig_749.g14137 Utricularia gibba HOM05D004254 ORTHO05D005184 2.0e-181 639.4 421 77.0
Sabra15G0030600 Salix brachista HOM05D004254 ORTHO05D005184 3.5e-181 638.6 355 94.6
ClCG06G014240 Citrullus lanatus HOM05D004254 ORTHO05D005184 1.3e-180 636.7 433 73.4
Nitab4.5_0010223g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 8.5e-180 634.0 419 78.5
Zm00001eb280650 Zea mays HOM05D004254 ORTHO05D005184 3.9e-177 625.2 416 75.2
Sabra15G0058300 Salix brachista HOM05D004254 ORTHO05D005184 4.4e-176 621.7 421 81.5
ATR1102G008 Amborella trichopoda HOM05D004254 ORTHO05D005184 5.7e-176 621.3 416 75.2
Os06g0258900 Oryza sativa ssp. japonica HOM05D004254 ORTHO05D005184 7.4e-176 620.9 416 75.2
AT1G18270 Arabidopsis thaliana HOM05D004254 ORTHO05D005184 1.3e-175 620.2 416 76.2
AL1G30650 Arabidopsis lyrata HOM05D004254 ORTHO05D005184 3.7e-175 618.6 416 76.2
Sp1g16240 Schrenkiella parvula HOM05D004254 ORTHO05D005184 1.4e-174 616.7 423 74.7
Thhalv10006567m.g Eutrema salsugineum HOM05D004254 ORTHO05D005184 1.8e-174 616.3 416 75.5
Cpa.g.sc3.389 Carica papaya HOM05D004254 ORTHO05D005184 3.1e-174 615.5 374 83.7
BolC5t30352H Brassica oleracea HOM05D004254 ORTHO05D005184 4.5e-173 611.7 423 74.2
SEGI_15506 Sequoiadendron giganteum HOM05D004254 ORTHO05D005184 1.7e-172 609.8 416 74.3
Carub.0001s1789 Capsella rubella HOM05D004254 ORTHO05D005184 2.2e-172 609.4 416 74.8
CARHR018830 Cardamine hirsuta HOM05D004254 ORTHO05D005184 2.2e-172 609.4 416 75.0
BcaC05g25721 Brassica carinata HOM05D004254 ORTHO05D005184 3.8e-172 608.6 423 74.0
A06p14290 Brassica napus HOM05D004254 ORTHO05D005184 5.0e-172 608.2 423 74.0
BraA06t24558Z Brassica rapa HOM05D004254 ORTHO05D005184 5.0e-172 608.2 423 74.0
C05p16550 Brassica napus HOM05D004254 ORTHO05D005184 1.1e-171 607.1 423 73.8
BcaB07g31814 Brassica carinata HOM05D004254 ORTHO05D005184 2.3e-169 599.4 423 72.8
Aa31LG7G2820 Aethionema arabicum HOM05D004254 ORTHO05D005184 6.3e-167 591.3 470 67.0
HPP92_023491 Vanilla planifolia HOM05D004254 ORTHO05D005184 9.1e-166 587.4 421 71.7
AUR62035874 Chenopodium quinoa HOM05D004254 ORTHO05D005184 5.9e-165 584.7 415 72.8
Peaxi162Scf00314g00334 Petunia axillaris HOM05D004254 ORTHO05D005184 1.2e-162 577.0 419 73.0
Sabra15G0030400 Salix brachista HOM05D004254 ORTHO05D005184 2.0e-157 559.7 314 92.7
Pp3c23_11630 Physcomitrium patens HOM05D004254 ORTHO05D005184 2.6e-144 516.2 419 64.0
Mapoly0094s0055 Marchantia polymorpha HOM05D004254 ORTHO05D005184 5.6e-139 498.4 416 62.5
SMO117G0106 Selaginella moellendorffii HOM05D004254 ORTHO05D005184 3.1e-137 492.7 420 61.9
Sabra15G0032700 Salix brachista HOM05D004254 ORTHO05D005184 8.3e-135 484.6 294 87.8
Hma1.2p1_0163F.1_g073040 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 2.1e-122 443.4 271 84.5
FAN08G2057 Fragaria x ananassa HOM05D004254 ORTHO05D005184 3.2e-118 429.5 285 77.5
Nn009s41423 Nelumbo nucifera HOM05D004254 ORTHO05D005184 3.2e-118 429.5 269 81.8
CDE05G2038 Ceratophyllum demersum HOM05D004254 ORTHO05D005184 9.6e-115 417.9 294 72.8
Sabra15G0033600 Salix brachista HOM05D004254 ORTHO05D005184 5.4e-110 402.1 456 56.1
Sabra15G0036000 Salix brachista HOM05D004254 ORTHO05D005184 1.3e-87 327.8 168 98.8
Sabra15G0036200 Salix brachista HOM05D004254 ORTHO05D005184 2.5e-75 287.0 147 97.3
Nn7g38444 Nelumbo nucifera HOM05D004254 ORTHO05D005184 2.1e-69 267.3 153 85.0
Nn4g24265 Nelumbo nucifera HOM05D004254 ORTHO05D005184 5.1e-68 262.7 155 82.6
Ciclev10009360m.g Citrus clementina HOM05D004254 ORTHO05D005184 2.8e-66 256.9 147 85.0
CBR_g29816 Chara braunii HOM05D000625 ORTHO05D000467 2.1e-53 214.2 192 54.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 2.7e-45 187.2 154 66.9
Glyma.09G175050 Glycine max HOM05D004254 ORTHO05D005184 1.8e-44 184.5 154 63.6
Pp3s32_560 Physcomitrium patens HOM05D000198 ORTHO05D005184 3.7e-34 150.2 271 37.3
CBR_g29815 Chara braunii HOM05D004254 ORTHO05D005184 1.9e-30 137.9 112 61.6
Pp3s34_503 Physcomitrium patens HOM05D004254 ORTHO05D005184 4.0e-28 130.2 188 39.9
Cfa024458 Carpinus fangiana HOM05D004254 ORTHO05D005184 5.2e-28 129.8 199 41.2
Sabra15G0033300 Salix brachista HOM05D004254 ORTHO05D005184 1.2e-27 128.6 64 96.9
Ah.13g074660 Amaranthus hybridus HOM05D004254 ORTHO05D005184 5.6e-22 109.8 73 75.3
Medtr0937s0020 Medicago truncatula HOM05D002248 ORTHO05D028641 1.4e-20 105.1 199 35.2
Ciclev10008504m.g Citrus clementina HOM05D004254 ORTHO05D005184 1.2e-19 102.1 62 82.3
arahy.Tifrunner.gnm1.ann1.W5GTH2 Arachis hypogaea HOM05D004254 ORTHO05D005184 3.0e-15 87.4 59 76.3
Cpa.g.sc3.390 Carica papaya HOM05D004254 ORTHO05D005184 1.2e-11 75.5 38 89.5
Hma1.2p1_1360F.1_g278110 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 2.6e-11 74.3 68 63.2
Lsat_1_v5_gn_8_47020 Lactuca sativa HOM05D001771 ORTHO05D001876 2.6e-11 74.3 137 38.0
ECA236G2469 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.4e-11 73.6 174 32.8
Actinidia20623 Actinidia chinensis HOM05D004254 ORTHO05D005184 2.2e-10 71.2 100 43.0
Lsat_1_v5_gn_5_118781 Lactuca sativa HOM05D001771 ORTHO05D001876 2.9e-10 70.9 137 36.5
ATR1177G001 Amborella trichopoda HOM05D004254 ORTHO05D005184 4.6e-08 63.5 41 70.7
ATR0629G095 Amborella trichopoda HOM05D004254 ORTHO05D005184 3.3e-06 57.4 53 58.5
ATR0283G001 Amborella trichopoda HOM05D004254 ORTHO05D005184 4.3e-06 57.0 53 56.6


User provided reference genes

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