Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0058300 Salix brachista HOM05D004254 ORTHO05D005184 0.0e+00 1333.5 679 100.0
Sabra15G0031800 Salix brachista HOM05D004254 ORTHO05D005184 0.0e+00 1087.8 843 72.7
Potri.015G037000 Populus trichocarpa HOM05D004254 ORTHO05D005184 8.7e-309 1063.1 861 70.5
Sabra15G0059400 Salix brachista HOM05D004254 ORTHO05D005184 1.8e-298 1028.9 804 72.4
Manes.06G005200 Manihot esculenta HOM05D004254 ORTHO05D005184 2.3e-277 958.7 861 63.1
Haze_18876 Corylus avellana HOM05D004254 ORTHO05D005184 4.5e-273 944.5 847 63.8
Thecc.03G057600 Theobroma cacao HOM05D004254 ORTHO05D005184 2.9e-272 941.8 861 61.9
COL.COLO4_06962 Corchorus olitorius HOM05D004254 ORTHO05D005184 6.1e-270 934.1 861 61.6
TWI81G0051 Tripterygium wilfordii HOM05D004254 ORTHO05D005184 1.4e-269 932.9 861 61.2
Gohir.D02G121800 Gossypium hirsutum HOM05D004254 ORTHO05D005184 2.3e-269 932.2 861 60.7
GSVIVG01008461001 Vitis vinifera HOM05D004254 ORTHO05D005184 3.9e-269 931.4 861 62.0
Gorai.005G132300 Gossypium raimondii HOM05D004254 ORTHO05D005184 1.5e-268 929.5 861 60.7
CSS0013925 Camellia sinensis var. sinensis HOM05D004254 ORTHO05D005184 2.0e-268 929.1 861 61.6
FAN18G0674 Fragaria x ananassa HOM05D004254 ORTHO05D005184 4.5e-265 917.9 821 62.2
Prupe.5G234300 Prunus persica HOM05D004254 ORTHO05D005184 4.5e-265 917.9 861 60.5
FAN13G1575 Fragaria x ananassa HOM05D004254 ORTHO05D005184 5.9e-265 917.5 821 62.4
Gohir.A03G092900 Gossypium hirsutum HOM05D004254 ORTHO05D005184 1.7e-264 916.0 861 59.9
Actinidia12362 Actinidia chinensis HOM05D004254 ORTHO05D005184 2.2e-264 915.6 861 60.3
MD14G1237000 Malus domestica HOM05D004254 ORTHO05D005184 2.9e-264 915.2 861 60.5
CANSAT21G0981 Cannabis sativa HOM05D004254 ORTHO05D005184 1.1e-263 913.3 861 59.6
Hma1.2p1_0163F.1_g073050 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 3.2e-263 911.8 862 60.3
PGR083G1460 Punica granatum HOM05D004254 ORTHO05D005184 3.2e-263 911.8 861 59.5
Ca_25341_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 2.1e-262 909.1 828 61.0
Ca_25342_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 2.1e-262 909.1 828 61.0
FvH4_5g17450 Fragaria vesca HOM05D004254 ORTHO05D005184 2.1e-262 909.1 861 59.8
Lj2g0021015 Lotus japonicus HOM05D004254 ORTHO05D005184 3.0e-261 905.2 861 59.3
CiPaw.15G144100 Carya illinoinensis HOM05D004254 ORTHO05D005184 3.9e-261 904.8 861 60.0
TAR629G2841 Trochodendron aralioides HOM05D004254 ORTHO05D005184 1.1e-260 903.3 861 60.0
Nitab4.5_0001264g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 1.5e-260 902.9 861 59.3
RcHm_v2.0_Chr7g0178241 Rosa chinensis HOM05D004254 ORTHO05D005184 3.7e-259 898.3 861 59.5
Eucgr.B00991 Eucalyptus grandis HOM05D004254 ORTHO05D005184 3.1e-258 895.2 861 60.0
FAN04G2545 Fragaria x ananassa HOM05D004254 ORTHO05D005184 4.1e-258 894.8 861 59.1
Lalb_Chr14g0370611 Lupinus albus HOM05D004254 ORTHO05D005184 1.4e-255 886.3 861 58.3
Sopen03g037600 Solanum pennellii HOM05D004254 ORTHO05D005184 1.4e-255 886.3 861 58.8
Lj5A159T43 Lonicera japonica HOM05D004254 ORTHO05D005184 1.9e-255 885.9 891 57.8
Solyc03g118640.3 Solanum lycopersicum HOM05D004254 ORTHO05D005184 1.6e-254 882.9 861 58.7
CAN.G843.50 Capsicum annuum HOM05D004254 ORTHO05D005184 2.7e-254 882.1 861 58.1
Rhsim08G0126700 Rhododendron simsii HOM05D004254 ORTHO05D005184 1.0e-253 880.2 909 56.0
Peaxi162Scf00314g00334 Petunia axillaris HOM05D004254 ORTHO05D005184 3.0e-253 878.6 829 60.3
TPR.G8645 Trifolium pratense HOM05D004254 ORTHO05D005184 1.1e-252 876.7 861 57.8
Sed0023132 Sechium edule HOM05D004254 ORTHO05D005184 2.6e-252 875.5 862 57.1
Nitab4.5_0010223g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 3.3e-252 875.2 901 55.9
Glyma.07G103000 Glycine max HOM05D004254 ORTHO05D005184 5.7e-252 874.4 861 58.2
PSO017G0085 Papaver somniferum HOM05D004254 ORTHO05D005184 8.2e-251 870.5 861 57.5
arahy.Tifrunner.gnm1.ann1.FFN37F Arachis hypogaea HOM05D004254 ORTHO05D005184 5.9e-249 864.4 812 60.0
Migut.I00270 Erythranthe guttata HOM05D004254 ORTHO05D005184 1.3e-248 863.2 861 56.9
Aqoxy3G00045 Aquilegia oxysepala HOM05D004254 ORTHO05D005184 2.2e-248 862.4 861 58.0
Psat1g030920 Pisum sativum HOM05D004254 ORTHO05D005184 2.2e-248 862.4 861 56.4
Lsat_1_v5_gn_8_141761 Lactuca sativa HOM05D004254 ORTHO05D005184 3.8e-248 861.7 861 57.1
CsaV3_1G004440 Cucumis sativus L. HOM05D004254 ORTHO05D005184 5.0e-248 861.3 861 56.6
PSO478G1825 Papaver somniferum HOM05D004254 ORTHO05D005184 8.5e-248 860.5 861 57.0
Duzib084G0705 Durio zibethinus HOM05D004254 ORTHO05D005184 1.1e-247 860.1 818 60.0
Phvul.004G150100 Phaseolus vulgaris HOM05D004254 ORTHO05D005184 1.1e-247 860.1 861 56.9
MELO3C017366.2 Cucumis melo HOM05D004254 ORTHO05D005184 5.5e-247 857.8 861 56.4
AT1G18270 Arabidopsis thaliana HOM05D004254 ORTHO05D005184 7.2e-247 857.4 861 57.4
MSTRG.11304 Avicennia marina HOM05D004254 ORTHO05D005184 2.7e-246 855.5 861 57.1
VMungo0464G0766 Vigna mungo HOM05D004254 ORTHO05D005184 2.7e-246 855.5 861 56.6
ClCG06G014240 Citrullus lanatus HOM05D004254 ORTHO05D005184 4.7e-246 854.7 900 54.8
arahy.Tifrunner.gnm1.ann1.QLLT1A Arachis hypogaea HOM05D004254 ORTHO05D005184 8.0e-246 854.0 838 58.2
AL1G30650 Arabidopsis lyrata HOM05D004254 ORTHO05D005184 1.0e-245 853.6 861 57.4
CARHR018830 Cardamine hirsuta HOM05D004254 ORTHO05D005184 3.0e-245 852.0 861 57.3
DCAR_012097 Daucus carota HOM05D004254 ORTHO05D005184 3.0e-245 852.0 861 57.3
Sc10g0009220 Simmondsia chinensis HOM05D004254 ORTHO05D005184 2.6e-244 849.0 861 55.6
Aa31LG7G2820 Aethionema arabicum HOM05D004254 ORTHO05D005184 1.7e-243 846.3 867 56.2
HanXRQChr17g0559181 Helianthus annuus HOM05D004254 ORTHO05D005184 2.2e-243 845.9 861 56.7
Thhalv10006567m.g Eutrema salsugineum HOM05D004254 ORTHO05D005184 3.7e-243 845.1 861 56.2
Carub.0001s1789 Capsella rubella HOM05D004254 ORTHO05D005184 1.0e-240 837.0 861 56.2
Sp1g16240 Schrenkiella parvula HOM05D004254 ORTHO05D005184 2.2e-240 835.9 861 55.9
A06p14290 Brassica napus HOM05D004254 ORTHO05D005184 5.0e-240 834.7 861 56.2
C05p16550 Brassica napus HOM05D004254 ORTHO05D005184 3.2e-239 832.0 866 55.8
ECA233G1972 Erigeron canadensis HOM05D004254 ORTHO05D005184 2.7e-238 828.9 861 55.5
BolC5t30352H Brassica oleracea HOM05D004254 ORTHO05D005184 4.7e-238 828.2 889 54.7
BraA06t24558Z Brassica rapa HOM05D004254 ORTHO05D005184 4.0e-237 825.1 886 54.6
SGA_v2.0_scaffold28G11766 Striga asiatica HOM05D004254 ORTHO05D005184 4.4e-236 821.6 927 52.2
MBI12_g17290_MAGBIO Magnolia biondii HOM05D004254 ORTHO05D005184 5.9e-233 811.2 802 58.4
unitig_749.g14137 Utricularia gibba HOM05D004254 ORTHO05D005184 4.0e-229 798.5 860 54.1
Zm00001eb280650 Zea mays HOM05D004254 ORTHO05D005184 8.9e-229 797.3 862 52.9
Os06g0258900 Oryza sativa ssp. japonica HOM05D004254 ORTHO05D005184 7.5e-228 794.3 862 52.8
AUR62035874 Chenopodium quinoa HOM05D004254 ORTHO05D005184 3.7e-227 792.0 838 54.7
BcaC05g25721 Brassica carinata HOM05D004254 ORTHO05D005184 8.3e-227 790.8 861 54.2
SEGI_15506 Sequoiadendron giganteum HOM05D004254 ORTHO05D005184 1.8e-226 789.6 861 52.6
Atru.chr9.1674 Acer truncatum HOM05D004254 ORTHO05D005184 2.9e-219 765.8 708 61.7
Cpa.g.sc3.389 Carica papaya HOM05D004254 ORTHO05D005184 2.3e-216 756.1 754 58.9
HPP92_023491 Vanilla planifolia HOM05D004254 ORTHO05D005184 5.0e-216 755.0 839 52.1
SalBow7G0492 Salvia bowleyana HOM05D004254 ORTHO05D005184 1.1e-207 727.2 793 53.3
vmacro17774 Vaccinium macrocarpon HOM05D004254 ORTHO05D005184 4.1e-202 708.8 802 52.2
Hma1.2p1_0163F.1_g073040 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 1.3e-190 670.6 689 56.6
ATR1102G008 Amborella trichopoda HOM05D004254 ORTHO05D005184 8.1e-190 667.9 726 53.2
QL10p030432 Quercus lobata HOM05D004254 ORTHO05D005184 4.0e-189 665.6 585 64.1
Nn009s41423 Nelumbo nucifera HOM05D004254 ORTHO05D005184 2.2e-187 659.8 687 56.0
Pp3c23_11630 Physcomitrium patens HOM05D004254 ORTHO05D005184 1.3e-184 650.6 884 45.6
Medtr6g069660 Medicago truncatula HOM05D004254 ORTHO05D005184 4.8e-182 642.1 545 63.9
Mapoly0094s0055 Marchantia polymorpha HOM05D004254 ORTHO05D005184 2.2e-179 633.3 875 44.3
Cc04_g06160 Coffea canephora HOM05D004254 ORTHO05D005184 1.4e-178 630.6 545 63.3
Sabra15G0062100 Salix brachista HOM05D004254 ORTHO05D005184 1.0e-176 624.4 421 81.5
Sabra15G0032200 Salix brachista HOM05D004254 ORTHO05D005184 3.8e-171 605.9 410 81.5
SMO117G0106 Selaginella moellendorffii HOM05D004254 ORTHO05D005184 1.3e-166 590.9 884 42.3
BcaB07g31814 Brassica carinata HOM05D004254 ORTHO05D005184 3.8e-163 579.3 545 59.8
Sabra15G0033600 Salix brachista HOM05D004254 ORTHO05D005184 2.4e-133 480.3 538 57.2
Sabra15G0032700 Salix brachista HOM05D004254 ORTHO05D005184 3.5e-132 476.5 312 83.0
Sabra15G0033300 Salix brachista HOM05D004254 ORTHO05D005184 1.1e-130 471.5 492 58.1
Sabra15G0030600 Salix brachista HOM05D004254 ORTHO05D005184 3.0e-128 463.4 354 74.9
Sabra15G0030400 Salix brachista HOM05D004254 ORTHO05D005184 3.4e-127 459.9 332 76.5
FAN08G2057 Fragaria x ananassa HOM05D004254 ORTHO05D005184 4.1e-101 373.2 287 69.7
Ah.13g074660 Amaranthus hybridus HOM05D004254 ORTHO05D005184 2.7e-100 370.5 477 46.8
Ciclev10008504m.g Citrus clementina HOM05D004254 ORTHO05D005184 1.6e-92 344.7 444 48.2
CDE05G2038 Ceratophyllum demersum HOM05D004254 ORTHO05D005184 3.7e-86 323.6 292 61.3
Sabra15G0036000 Salix brachista HOM05D004254 ORTHO05D005184 3.2e-85 320.5 195 87.2
Oeu026271.2 Olea europaea HOM05D004254 ORTHO05D005184 2.1e-84 317.8 423 46.1
Sabra15G0032100 Salix brachista HOM05D004254 ORTHO05D005184 7.8e-84 315.8 182 88.5
QL10p030449 Quercus lobata HOM05D004254 ORTHO05D005184 3.9e-83 313.5 282 61.0
Cc04_g06150 Coffea canephora HOM05D004254 ORTHO05D005184 1.6e-76 291.6 307 53.7
Medtr6g069685 Medicago truncatula HOM05D004254 ORTHO05D005184 3.0e-75 287.3 257 59.5
Sabra15G0036200 Salix brachista HOM05D004254 ORTHO05D005184 2.8e-73 280.8 174 85.1
Ciclev10009360m.g Citrus clementina HOM05D004254 ORTHO05D005184 2.8e-65 254.2 174 75.9
Nn4g24265 Nelumbo nucifera HOM05D004254 ORTHO05D005184 6.2e-65 253.1 175 74.3
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 4.2e-53 213.8 224 55.8
Nn7g38444 Nelumbo nucifera HOM05D004254 ORTHO05D005184 1.0e-51 209.1 148 73.0
Sabra15G0062200 Salix brachista HOM05D004254 ORTHO05D005184 6.7e-51 206.5 160 68.8
Sabra15G0033400 Salix brachista HOM05D004254 ORTHO05D005184 6.1e-44 183.3 96 95.8
Sabra15G0030700 Salix brachista HOM05D004254 ORTHO05D005184 2.2e-41 174.9 86 97.7
Glyma.09G175050 Glycine max HOM05D004254 ORTHO05D005184 2.4e-40 171.4 159 59.1
CBR_g29815 Chara braunii HOM05D004254 ORTHO05D005184 3.2e-37 161.0 131 60.3
Sabra15G0030800 Salix brachista HOM05D004254 ORTHO05D005184 4.6e-36 157.1 100 82.0
arahy.Tifrunner.gnm1.ann1.W5GTH2 Arachis hypogaea HOM05D004254 ORTHO05D005184 6.3e-33 146.7 124 63.7
ATR1102G040 Amborella trichopoda HOM05D004254 ORTHO05D005184 5.0e-30 137.1 96 68.8
CBR_g29816 Chara braunii HOM05D000625 ORTHO05D000467 9.4e-29 132.9 178 44.4
Pp3s32_560 Physcomitrium patens HOM05D000198 ORTHO05D005184 1.2e-28 132.5 218 39.0
Pp3s34_503 Physcomitrium patens HOM05D004254 ORTHO05D005184 8.8e-27 126.3 215 36.7
Cpa.g.sc3.390 Carica papaya HOM05D004254 ORTHO05D005184 9.1e-24 116.3 65 86.2
Cfa024458 Carpinus fangiana HOM05D004254 ORTHO05D005184 4.5e-23 114.0 228 36.8
arahy.Tifrunner.gnm1.ann1.S6Z25U Arachis hypogaea HOM05D004254 ORTHO05D005184 1.7e-22 112.1 106 58.5
Sabra15G0032500 Salix brachista HOM05D004254 ORTHO05D000563 8.5e-22 109.8 53 100.0
arahy.Tifrunner.gnm1.ann1.PNMJ0W Arachis hypogaea HOM05D004254 ORTHO05D005184 3.2e-21 107.8 204 36.3
Sabra15G0032600 Salix brachista HOM05D013434 ORTHO05D014659 3.6e-20 104.4 82 68.3
Medtr0937s0020 Medicago truncatula HOM05D002248 ORTHO05D028641 1.0e-19 102.8 245 31.0
arahy.Tifrunner.gnm1.ann1.ME0Z4L Arachis hypogaea HOM05D004254 ORTHO05D005184 3.0e-19 101.3 63 73.0
TAR629G3411 Trochodendron aralioides HOM05D004254 ORTHO05D005184 5.3e-16 90.5 114 36.0
Ca_29429_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 3.8e-14 84.3 77 49.4
Sabra15G0032400 Salix brachista HOM05D004254 ORTHO05D005184 1.5e-13 82.4 43 95.3
CBR_g29817 Chara braunii HOM05D000019 ORTHO05D000353 5.5e-13 80.5 214 27.6
Hma1.2p1_1360F.1_g278110 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 8.8e-11 73.2 49 75.5
arahy.Tifrunner.gnm1.ann1.Y8MDWH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.3e-09 69.3 43 79.1
vmacro17775 Vaccinium macrocarpon HOM05D004254 ORTHO05D005184 2.8e-09 68.2 42 81.0
Cfa024457 Carpinus fangiana HOM05D004254 ORTHO05D005184 4.8e-09 67.4 104 37.5
arahy.Tifrunner.gnm1.ann1.3FM8Z5 Arachis hypogaea HOM05D004254 ORTHO05D005184 1.1e-08 66.2 43 69.8
CBR_g29818 Chara braunii HOM05D004254 ORTHO05D005184 4.1e-08 64.3 43 65.1
Nn4g24267 Nelumbo nucifera HOM05D004254 ORTHO05D005184 5.4e-08 63.9 70 38.6
CSS0009641 Camellia sinensis var. sinensis HOM05D004254 ORTHO05D005184 7.0e-08 63.5 72 38.9
Ciclev10010566m.g Citrus clementina HOM05D004254 ORTHO05D005184 2.0e-07 62.0 73 35.6


User provided reference genes

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