Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0053600 Salix brachista HOM05D002663 ORTHO05D002988 5.7e-89 330.9 166 100.0
Sabra15G0045100 Salix brachista HOM05D002663 ORTHO05D002988 7.8e-78 293.9 151 97.4
Sabra15G0047600 Salix brachista HOM05D002663 ORTHO05D002988 3.6e-59 231.9 120 97.5
Sabra15G0043200 Salix brachista HOM05D002663 ORTHO05D002988 8.1e-59 230.7 120 96.7
Sabra15G0059500 Salix brachista HOM05D002663 ORTHO05D002988 8.1e-59 230.7 120 96.7
Sabra15G0045400 Salix brachista HOM05D002663 ORTHO05D002988 6.6e-45 184.5 120 82.5
Sabra15G0054700 Salix brachista HOM05D002663 ORTHO05D002988 3.8e-40 168.7 90 94.4
Sabra15G0051000 Salix brachista HOM05D002663 ORTHO05D002988 1.3e-27 127.1 90 77.8
Sabra15G0061200 Salix brachista HOM05D002663 ORTHO05D002988 1.3e-27 127.1 90 77.8
Potri.015G042100 Populus trichocarpa HOM05D002663 ORTHO05D002988 8.4e-24 114.4 90 70.0
Ca_17862_v3 Cicer arietinum L. HOM05D002663 ORTHO05D002988 4.6e-22 108.6 95 61.1
arahy.Tifrunner.gnm1.ann1.IMR5XM Arachis hypogaea HOM05D002663 ORTHO05D002988 1.3e-21 107.1 95 61.1
arahy.Tifrunner.gnm1.ann1.JDYV4L Arachis hypogaea HOM05D002663 ORTHO05D002988 1.3e-21 107.1 95 61.1
Glyma.08G122600 Glycine max HOM05D002663 ORTHO05D002988 3.0e-21 105.9 95 60.0
Lalb_Chr13g0295491 Lupinus albus HOM05D002663 ORTHO05D002988 5.1e-21 105.1 90 63.3
Manes.05G070100 Manihot esculenta HOM05D002663 ORTHO05D002988 8.7e-21 104.4 90 62.2
QL12p023424 Quercus lobata HOM05D002663 ORTHO05D002988 1.5e-20 103.6 85 65.9
TWI14G0131 Tripterygium wilfordii HOM05D002663 ORTHO05D002988 2.5e-20 102.8 90 62.2
Cpa.g.sc9.146 Carica papaya HOM05D002663 ORTHO05D002988 3.3e-20 102.4 90 60.0
Glyma.05G165200 Glycine max HOM05D002663 ORTHO05D002988 3.3e-20 102.4 90 61.1
Prupe.8G250200 Prunus persica HOM05D002663 ORTHO05D002988 3.3e-20 102.4 90 61.1
Atru.chr5.1301_Atru.chr5.1302 Acer truncatum HOM05D002663 ORTHO05D002988 4.3e-20 102.1 90 62.2
Lj4g0008753 Lotus japonicus HOM05D002663 ORTHO05D002988 4.3e-20 102.1 95 56.8
TAR362G0766 Trochodendron aralioides HOM05D002663 ORTHO05D002988 4.3e-20 102.1 90 62.2
Phvul.002G245400 Phaseolus vulgaris HOM05D002663 ORTHO05D002988 5.7e-20 101.7 90 61.1
COL.COLO4_08048 Corchorus olitorius HOM05D002663 ORTHO05D002988 9.7e-20 100.9 87 62.1
Eucgr.K03423 Eucalyptus grandis HOM05D002663 ORTHO05D002988 9.7e-20 100.9 90 62.2
RcHm_v2.0_Chr6g0292291 Rosa chinensis HOM05D002663 ORTHO05D002988 2.2e-19 99.8 95 56.8
Sc24g0004040 Simmondsia chinensis HOM05D002663 ORTHO05D002988 2.2e-19 99.8 90 60.0
CiPaw.07G098000 Carya illinoinensis HOM05D002663 ORTHO05D002988 2.8e-19 99.4 90 61.1
Gohir.A11G118800 Gossypium hirsutum HOM05D002663 ORTHO05D002988 2.8e-19 99.4 90 56.7
Gohir.D11G123700 Gossypium hirsutum HOM05D002663 ORTHO05D002988 2.8e-19 99.4 90 56.7
Haze_04793 Corylus avellana HOM05D002663 ORTHO05D002988 3.7e-19 99.0 90 62.2
Hma1.2p1_1651F.1_g295770 Hydrangea macrophylla HOM05D002663 ORTHO05D002988 4.8e-19 98.6 90 60.0
MD11G1296300 Malus domestica HOM05D002663 ORTHO05D002988 4.8e-19 98.6 90 61.1
Psat7g065720 Pisum sativum HOM05D002663 ORTHO05D002988 4.8e-19 98.6 95 55.8
Thecc.01G288300 Theobroma cacao HOM05D002663 ORTHO05D002988 4.8e-19 98.6 90 58.9
MBI19_g25933_MAGBIO Magnolia biondii HOM05D002663 ORTHO05D002988 6.3e-19 98.2 90 57.8
PGR044G1923 Punica granatum HOM05D002663 ORTHO05D002988 6.3e-19 98.2 90 56.7
DCAR_018373 Daucus carota HOM05D002663 ORTHO05D002988 8.2e-19 97.8 90 60.0
Gorai.007G132600 Gossypium raimondii HOM05D002663 ORTHO05D002988 1.1e-18 97.4 90 55.6
AUR62034595 Chenopodium quinoa HOM05D002663 ORTHO05D002988 1.4e-18 97.1 90 57.8
Cc01_g20050 Coffea canephora HOM05D002663 ORTHO05D002988 1.4e-18 97.1 95 55.8
CANSAT25G2471 Cannabis sativa HOM05D002663 ORTHO05D002988 1.8e-18 96.7 95 53.7
Lj1A40T82 Lonicera japonica HOM05D002663 ORTHO05D002988 1.8e-18 96.7 105 52.4
Sed0012646 Sechium edule HOM05D002663 ORTHO05D002988 1.8e-18 96.7 90 57.8
Actinidia00709 Actinidia chinensis HOM05D002663 ORTHO05D002988 2.4e-18 96.3 113 49.6
Cfa006059 Carpinus fangiana HOM05D002663 ORTHO05D002988 5.3e-18 95.1 90 60.0
ECA248G0286 Erigeron canadensis HOM05D002663 ORTHO05D002988 5.3e-18 95.1 90 56.7
Rhsim13G0018700 Rhododendron simsii HOM05D002663 ORTHO05D002988 5.3e-18 95.1 111 49.5
vmacro02520 Vaccinium macrocarpon HOM05D002663 ORTHO05D002988 5.3e-18 95.1 90 56.7
CDE05G2057 Ceratophyllum demersum HOM05D002663 ORTHO05D002988 6.9e-18 94.7 90 58.9
AUR62036674 Chenopodium quinoa HOM05D002663 ORTHO05D002988 6.9e-18 94.7 90 56.7
AUR62044300 Chenopodium quinoa HOM05D002663 ORTHO05D002988 6.9e-18 94.7 90 56.7
Migut.N02124 Erythranthe guttata HOM05D002663 ORTHO05D002988 9.0e-18 94.4 90 56.7
FvH4_2g24450 Fragaria vesca HOM05D002663 ORTHO05D002988 9.0e-18 94.4 90 56.7
FAN24G0935 Fragaria x ananassa HOM05D002663 ORTHO05D002988 9.0e-18 94.4 90 56.7
Lsat_1_v5_gn_5_189660 Lactuca sativa HOM05D002663 ORTHO05D002988 2.6e-17 92.8 88 56.8
MELO3C023740.2 Cucumis melo HOM05D002663 ORTHO05D002988 3.4e-17 92.4 100 49.0
EL10Ac5g11662 Beta vulgaris HOM05D002663 ORTHO05D002988 4.5e-17 92.0 90 55.6
CsaV3_3G020180 Cucumis sativus L. HOM05D002663 ORTHO05D002988 5.9e-17 91.7 100 48.0
HanXRQChr11g0334821 Helianthus annuus HOM05D002663 ORTHO05D002988 1.3e-16 90.5 90 54.4
Dinv11283 Davidia involucrata HOM05D002663 ORTHO05D002988 1.7e-16 90.1 90 54.4
Ah.08g212770 Amaranthus hybridus HOM05D002663 ORTHO05D002988 2.2e-16 89.7 90 54.4
EL10Ac8g19575 Beta vulgaris HOM05D002663 ORTHO05D002988 2.9e-16 89.4 90 54.4
Nitab4.5_0010231g0020 Nicotiana tabacum HOM05D002663 ORTHO05D002988 2.9e-16 89.4 90 53.3
Oeu001452.1 Olea europaea HOM05D002663 ORTHO05D002988 2.9e-16 89.4 106 49.1
Nitab4.5_0001651g0140 Nicotiana tabacum HOM05D002663 ORTHO05D002988 5.0e-16 88.6 90 53.3
Sopen09g029140 Solanum pennellii HOM05D002663 ORTHO05D002988 5.0e-16 88.6 90 51.1
PGSC0003DMG400016854 Solanum tuberosum HOM05D002663 ORTHO05D002988 8.5e-16 87.8 90 51.1
CAN.G806.1 Capsicum annuum HOM05D002663 ORTHO05D002988 1.9e-15 86.7 90 50.0
FAN27G1532 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.9e-15 86.7 90 57.8
unitig_744.g24628 Utricularia gibba HOM05D002663 ORTHO05D002988 1.9e-15 86.7 90 52.2
Peaxi162Scf00006g03625 Petunia axillaris HOM05D002663 ORTHO05D002988 5.5e-15 85.1 88 51.1
Solyc09g074310.3 Solanum lycopersicum HOM05D002663 ORTHO05D002988 5.5e-15 85.1 90 50.0
Hund05368 Selenicereus undatus HOM05D002663 ORTHO05D002988 4.6e-14 82.0 118 43.2
HPP92_011329 Vanilla planifolia HOM05D002663 ORTHO05D002988 4.6e-14 82.0 90 48.9
Manes.16G049740 Manihot esculenta HOM05D002663 ORTHO05D002988 3.0e-13 79.3 88 51.1
ATR0487G012 Amborella trichopoda HOM05D002663 ORTHO05D002988 8.8e-13 77.8 101 46.5
Os11g0645200 Oryza sativa ssp. japonica HOM05D002663 ORTHO05D002988 2.0e-12 76.6 90 48.9
GSVIVG01011027001 Vitis vinifera HOM05D002663 ORTHO05D002988 2.2e-11 73.2 82 48.8
TPR.G6761 Trifolium pratense HOM05D000825 ORTHO05D003684 6.3e-11 71.6 78 51.3
SMO236G0130 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 1.5e-09 67.0 93 40.9
Medtr8g088170 Medicago truncatula HOM05D000825 ORTHO05D003684 2.6e-09 66.2 71 50.7
AagrBONN_evm.TU.Sc2ySwM_228.654 Anthoceros agrestis HOM05D002663 ORTHO05D002988 1.3e-08 63.9 90 38.9
CBR_g34010 Chara braunii HOM05D002663 ORTHO05D002988 1.3e-08 63.9 85 43.5
CBR_g410 Chara braunii HOM05D002663 ORTHO05D002988 1.3e-08 63.9 85 43.5
FAN20G1908 Fragaria x ananassa HOM05D002663 ORTHO05D002988 1.7e-08 63.5 90 45.6
Pp3c21_17600 Physcomitrium patens HOM05D002663 ORTHO05D002988 1.7e-08 63.5 95 38.9
Mapoly0131s0005 Marchantia polymorpha HOM05D002663 ORTHO05D002988 2.9e-08 62.8 95 38.9
AUR62036670 Chenopodium quinoa HOM05D002663 ORTHO05D002988 5.5e-07 58.5 100 41.0
CDE05G0856 Ceratophyllum demersum HOM05D000039 ORTHO05D002988 7.2e-07 58.2 42 71.4
ClCG05G012270 Citrullus lanatus HOM05D002663 ORTHO05D002988 7.2e-07 58.2 62 53.2
VMungo0251G0385 Vigna mungo HOM05D002663 ORTHO05D002988 7.2e-07 58.2 42 69.0
Cre03.g195050 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.6e-06 57.0 85 42.4
SalBow2G2285 Salvia bowleyana HOM05D002663 ORTHO05D002988 2.1e-06 56.6 57 56.1


User provided reference genes

Program Settings