Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 3.1e-116 422.2 270 100.0
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 1.9e-110 402.9 309 87.4
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 1.9e-110 402.9 309 87.4
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 1.5e-107 393.3 316 85.1
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 1.1e-100 370.5 199 99.0
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.1e-89 334.0 311 65.9
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 1.4e-76 290.4 297 74.1
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 2.5e-65 253.1 310 52.6
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 4.4e-62 242.3 311 49.5
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.2e-59 234.2 311 48.2
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.0e-58 231.1 312 49.0
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 6.5e-58 228.4 310 48.1
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 8.5e-58 228.0 310 48.4
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 2.5e-57 226.5 309 47.2
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 3.2e-57 226.1 329 47.1
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 4.7e-56 222.2 310 46.8
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.4e-55 220.7 324 46.3
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 1.8e-55 220.3 316 45.9
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 4.0e-55 219.2 309 46.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 5.2e-55 218.8 309 46.6
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 6.8e-55 218.4 325 45.5
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 1.2e-54 217.6 320 46.9
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 3.4e-54 216.1 312 46.8
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 3.4e-54 216.1 312 46.5
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 5.7e-54 215.3 310 47.7
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.7e-53 213.8 312 51.6
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 4.8e-53 212.2 314 45.2
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 6.3e-53 211.8 311 46.0
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 8.3e-53 211.5 311 46.6
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.1e-52 211.1 321 45.5
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.1e-52 211.1 322 48.1
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.8e-52 210.3 314 43.6
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 2.4e-52 209.9 319 44.2
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.1e-52 209.5 297 56.9
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 9.1e-52 208.0 310 47.4
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 9.1e-52 208.0 329 48.6
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 1.6e-51 207.2 313 46.0
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.6e-51 207.2 314 43.3
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 4.5e-51 205.7 311 46.0
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 5.9e-51 205.3 314 43.0
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 1.3e-50 204.1 321 44.2
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 1.3e-50 204.1 316 45.3
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 2.2e-50 203.4 314 45.2
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 3.8e-50 202.6 320 44.7
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 3.8e-50 202.6 315 43.5
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.5e-49 200.7 310 48.4
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.5e-49 200.7 321 44.5
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 2.5e-49 199.9 315 45.7
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 4.2e-49 199.1 317 43.5
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.2e-48 197.6 310 45.2
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 2.1e-48 196.8 317 43.2
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.7e-48 196.4 314 44.6
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 6.1e-48 195.3 209 56.0
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 8.0e-48 194.9 311 44.7
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 8.0e-48 194.9 309 44.0
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.4e-47 194.1 309 45.0
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 2.3e-47 193.4 314 44.3
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 3.0e-47 193.0 353 40.5
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 3.0e-47 193.0 300 45.7
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 3.0e-47 193.0 354 40.4
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 5.2e-47 192.2 322 44.1
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 6.8e-47 191.8 323 42.1
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 6.8e-47 191.8 309 43.4
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 1.2e-46 191.0 321 44.2
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 4.4e-46 189.1 338 40.5
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 7.5e-46 188.3 308 51.6
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 9.8e-46 188.0 315 41.3
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 9.8e-46 188.0 315 41.3
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.3e-45 187.6 204 55.9
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 2.2e-45 186.8 321 43.3
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.2e-45 186.8 310 43.5
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 2.2e-45 186.8 314 41.7
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 2.8e-45 186.4 320 42.5
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 4.9e-45 185.7 317 42.9
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 4.9e-45 185.7 317 42.6
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.1e-44 184.5 315 44.8
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 1.4e-44 184.1 322 44.1
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 2.4e-44 183.3 230 52.2
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 5.4e-44 182.2 308 41.2
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 5.4e-44 182.2 319 41.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 9.1e-44 181.4 319 41.4
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.6e-43 180.6 201 54.7
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.0e-43 180.3 328 41.8
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 4.5e-43 179.1 311 41.5
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 7.7e-43 178.3 310 47.4
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 2.3e-42 176.8 315 42.2
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 2.9e-42 176.4 310 39.7
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 3.8e-42 176.0 306 44.4
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 1.1e-41 174.5 311 43.4
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 1.5e-41 174.1 326 41.4
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 1.9e-41 173.7 310 40.3
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 1.9e-41 173.7 284 47.9
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 2.5e-41 173.3 203 51.2
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 4.2e-41 172.6 309 39.2
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 7.2e-41 171.8 329 39.5
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 6.1e-40 168.7 318 45.6
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 5.2e-39 165.6 200 50.5
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 8.9e-39 164.9 314 38.9
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 2.6e-38 163.3 332 44.9
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 2.9e-37 159.8 310 40.6
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 2.9e-37 159.8 310 47.7
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 3.7e-37 159.5 256 42.6
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 3.7e-37 159.5 256 42.6
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 1.8e-36 157.1 310 46.5
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 2.0e-35 153.7 306 51.0
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 2.0e-35 153.7 306 51.0
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 4.6e-35 152.5 263 40.3
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 5.9e-35 152.1 306 50.7
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 5.9e-35 152.1 306 50.7
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 2.3e-34 150.2 308 49.7
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 8.6e-34 148.3 190 49.5
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.3e-33 146.4 197 47.7
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.3e-33 146.0 211 46.0
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.1e-32 143.7 217 44.2
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 8.9e-31 138.3 204 44.6
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 2.0e-30 137.1 171 50.9
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.4e-28 130.2 99 70.7
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 5.4e-28 129.0 269 39.4
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 7.8e-27 125.2 324 33.0
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 5.0e-26 122.5 182 44.0
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 6.6e-26 122.1 202 44.1
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 8.6e-26 121.7 248 39.1
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 3.3e-25 119.8 197 44.2
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.2e-24 117.9 148 53.4
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.6e-24 116.3 103 58.3
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.1e-23 114.8 200 42.0
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.8e-23 114.0 253 37.2
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 2.3e-23 113.6 92 67.4
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 8.9e-23 111.7 85 69.4
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 2.6e-22 110.2 104 54.8
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 2.9e-21 106.7 211 39.8
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 1.4e-20 104.4 235 36.6
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 2.4e-20 103.6 263 40.7
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 9.2e-20 101.7 138 47.8
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 6.0e-19 99.0 206 44.2
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 6.0e-19 99.0 260 35.8
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 1.9e-17 94.0 191 37.7
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 3.3e-17 93.2 208 41.8
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 5.6e-17 92.4 233 51.5
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.8e-15 87.4 92 51.1
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.0e-14 84.0 201 35.8
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 3.7e-13 79.7 275 32.7
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.1e-12 78.2 59 72.9
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.1e-12 78.2 232 31.5
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 1.4e-12 77.8 74 60.8
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 1.0e-10 71.6 92 45.7
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 3.3e-09 66.6 150 48.0
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 9.6e-09 65.1 52 69.2
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 4.0e-07 59.7 110 41.8
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 5.2e-07 59.3 155 32.3
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 8.9e-07 58.5 57 59.6


User provided reference genes

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