Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 3.5e-249 865.1 681 100.0
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 6.8e-245 850.9 526 93.5
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 6.3e-243 844.3 526 94.5
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 9.1e-242 840.5 526 90.5
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-240 836.6 681 94.1
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 1.1e-221 773.9 702 68.8
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 1.8e-221 773.1 857 75.0
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.4e-220 768.8 497 91.1
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 7.1e-218 761.1 737 67.3
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 3.6e-198 695.7 1033 62.1
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 3.4e-196 689.1 528 74.1
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 7.1e-178 628.2 500 76.4
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 4.1e-93 346.7 524 53.6
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 6.4e-86 322.8 525 50.7
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 1.7e-83 314.7 524 50.4
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 5.3e-80 303.1 485 45.4
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 2.9e-78 297.4 525 49.3
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 3.8e-78 297.0 526 47.9
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 3.8e-78 297.0 526 48.1
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 3.2e-77 293.9 535 42.6
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 1.3e-70 271.9 527 47.2
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 6.0e-68 263.1 531 45.0
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 3.0e-67 260.8 521 48.2
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 1.1e-66 258.8 521 48.0
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 1.9e-66 258.1 525 36.2
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 5.3e-64 250.0 526 38.6
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 1.0e-62 245.7 522 31.4
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 2.9e-62 244.2 533 45.2
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 3.8e-62 243.8 527 47.8
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 6.0e-60 236.5 503 47.3
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 4.3e-58 230.3 508 45.9
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 9.7e-58 229.2 523 37.7
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 1.6e-57 228.4 541 43.4
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 1.1e-56 225.7 472 34.5
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 4.1e-56 223.8 525 36.4
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 4.1e-56 223.8 520 45.6
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 5.9e-55 219.9 489 46.4
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 1.3e-54 218.8 530 35.7
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.2e-54 218.0 503 45.5
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 2.5e-53 214.5 360 45.6
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 5.5e-53 213.4 526 45.8
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 5.5e-53 213.4 488 46.1
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 9.3e-53 212.6 522 35.8
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 5.1e-51 206.8 526 46.2
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 2.8e-49 201.1 530 34.3
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 2.8e-49 201.1 530 34.3
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 6.3e-49 199.9 536 42.5
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 8.2e-49 199.5 531 41.4
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 1.4e-48 198.7 523 41.3
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.4e-48 198.7 528 40.9
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 3.1e-48 197.6 513 43.1
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 1.0e-46 192.6 510 45.3
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.7e-46 191.8 531 43.7
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 3.8e-46 190.7 461 45.1
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 6.5e-46 189.9 548 29.0
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.3e-41 175.6 262 65.3
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 8.2e-41 172.9 262 64.1
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 1.7e-38 165.2 325 57.2
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 2.2e-38 164.9 530 32.3
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 2.5e-37 161.4 324 54.3
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 9.4e-37 159.5 216 39.8
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 1.6e-31 142.1 277 30.7
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.7e-30 138.7 536 40.3
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.2e-28 132.5 530 40.4
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 2.2e-25 121.7 144 43.1
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 3.1e-24 117.9 517 31.7
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 3.1e-24 117.9 515 39.2
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 7.0e-24 116.7 515 39.0
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.3e-22 112.5 118 46.6
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 1.7e-22 112.1 116 53.4
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 2.5e-21 108.2 125 44.8
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 1.2e-20 105.9 165 40.0
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 1.6e-20 105.5 510 33.1
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 2.1e-20 105.1 120 48.3
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 4.4e-18 97.4 123 43.9
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 1.1e-16 92.8 508 23.2
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 4.1e-16 90.9 146 33.6
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 5.4e-16 90.5 171 33.3
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 6.8e-11 73.6 137 32.8
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 8.9e-11 73.2 107 33.6
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 8.9e-11 73.2 107 33.6
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 8.9e-11 73.2 107 33.6
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 2.0e-10 72.0 171 29.2
CSS0048528 Camellia sinensis var. sinensis HOM05D006258 ORTHO05D007961 1.4e-08 65.9 225 20.4
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 1.8e-08 65.5 112 37.5
AagrBONN_evm.TU.Sc2ySwM_228.531 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-08 65.1 123 33.3
CSS0026764 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 5.4e-08 63.9 66 43.9
Prupe.7G266300 Prunus persica HOM05D006258 ORTHO05D007961 5.4e-08 63.9 186 21.5
AagrBONN_evm.TU.Sc2ySwM_344.302 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-08 63.5 197 24.4
AagrBONN_evm.TU.Sc2ySwM_117.3629 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-07 62.8 197 23.9
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 1.2e-07 62.8 170 24.1
Oeu036702.1 Olea europaea HOM05D000001 ORTHO05D009069 1.2e-07 62.8 199 26.6
CDE04G0575 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 2.7e-07 61.6 192 24.0
Eucgr.B00586 Eucalyptus grandis HOM05D000001 ORTHO05D009948 2.7e-07 61.6 197 23.4
THA.LOC104811334 Tarenaya hassleriana HOM05D006258 ORTHO05D007961 3.5e-07 61.2 181 22.7
Dinv42824 Davidia involucrata HOM05D006258 ORTHO05D007961 5.9e-07 60.5 186 20.4
Dinv43276 Davidia involucrata HOM05D006258 ORTHO05D007961 5.9e-07 60.5 186 20.4
Thecc.09G153300 Theobroma cacao HOM05D006258 ORTHO05D007961 5.9e-07 60.5 186 21.0
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 7.8e-07 60.1 146 26.7
CAN.G497.86 Capsicum annuum HOM05D005622 ORTHO05D002854 7.8e-07 60.1 226 23.5
Gorai.008G269700 Gossypium raimondii HOM05D000001 ORTHO05D000003 7.8e-07 60.1 215 23.7
Aa31LG2G19560 Aethionema arabicum HOM05D006258 ORTHO05D007961 1.0e-06 59.7 186 19.4
Gohir.D12G251600 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.0e-06 59.7 215 23.7
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 1.0e-06 59.7 190 23.7
Migut.J01390 Erythranthe guttata HOM05D006258 ORTHO05D007961 1.7e-06 58.9 186 22.0
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 2.3e-06 58.5 186 19.4
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 2.3e-06 58.5 131 29.0
ATR0564G154 Amborella trichopoda HOM05D000001 ORTHO05D000003 2.9e-06 58.2 189 23.8
AagrBONN_evm.TU.Sc2ySwM_362.261 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.9e-06 58.2 164 23.8
CiPaw.16G107200 Carya illinoinensis HOM05D006258 ORTHO05D007961 2.9e-06 58.2 188 21.3
Lj1g0020630 Lotus japonicus HOM05D008684 ORTHO05D010796 2.9e-06 58.2 187 23.5
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 2.9e-06 58.2 260 19.2
AagrBONN_evm.TU.Sc2ySwM_344.3539 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.8e-06 57.8 203 26.6
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 3.8e-06 57.8 186 19.9
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 3.8e-06 57.8 186 19.9
Nitab4.5_0004239g0030 Nicotiana tabacum HOM05D007545 ORTHO05D009579 3.8e-06 57.8 205 25.4
SalBow1G4688 Salvia bowleyana HOM05D006258 ORTHO05D007961 3.8e-06 57.8 208 22.6
Thecc.03G194800 Theobroma cacao HOM05D000001 ORTHO05D000003 3.8e-06 57.8 219 21.0
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 5.0e-06 57.4 186 19.9
Psat2g129840 Pisum sativum HOM05D005622 ORTHO05D002854 5.0e-06 57.4 226 24.8
AagrBONN_evm.TU.Sc2ySwM_369.91 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.6e-06 57.0 164 24.4
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 8.6e-06 56.6 107 30.8
CSS0035230 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.6e-06 56.6 211 21.8
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 8.6e-06 56.6 148 27.0
GSVIVG01006104001 Vitis vinifera HOM05D000001 ORTHO05D000003 8.6e-06 56.6 211 22.7
GSVIVG01006121001 Vitis vinifera HOM05D000001 ORTHO05D000003 8.6e-06 56.6 211 22.7


User provided reference genes

Program Settings