Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 8.1e-312 1072.8 595 100.0
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 4.4e-309 1063.9 590 99.3
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 5.6e-227 791.2 538 79.0
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.1e-169 600.9 538 62.6
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 1.0e-156 557.8 541 57.7
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.3e-156 556.6 544 57.4
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 3.9e-156 555.8 540 57.8
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 1.5e-155 553.9 545 57.4
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 3.3e-155 552.7 541 60.3
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 6.3e-154 548.5 545 57.8
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 6.3e-154 548.5 548 58.4
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 5.3e-153 545.4 545 57.6
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 9.1e-153 544.7 536 57.1
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.5e-152 543.9 541 57.1
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 5.9e-152 542.0 545 57.2
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.7e-152 541.6 548 56.6
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.5e-150 536.6 547 55.0
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 9.4e-150 534.6 548 55.7
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.6e-149 533.9 547 55.8
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 6.7e-148 528.5 554 54.0
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.3e-146 524.2 568 53.5
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 6.3e-146 521.9 536 53.9
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 2.4e-145 520.0 558 53.6
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 5.3e-145 518.8 544 55.1
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 2.6e-144 516.5 540 55.0
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.0e-143 514.6 549 53.9
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 1.7e-143 513.8 536 53.5
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.7e-143 513.8 538 57.6
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 2.2e-143 513.5 544 52.4
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 3.8e-143 512.7 538 53.5
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 5.0e-143 512.3 539 53.8
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.0e-140 504.6 549 55.9
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 5.7e-139 498.8 530 52.3
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.4e-137 493.4 546 50.4
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 3.5e-136 489.6 537 55.1
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.3e-135 487.6 547 51.2
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 1.1e-134 484.6 508 55.7
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 3.2e-134 483.0 542 49.8
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 5.5e-134 482.3 538 51.9
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 1.2e-133 481.1 549 50.6
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 8.0e-133 478.4 535 49.5
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 8.8e-132 474.9 540 48.7
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 8.8e-132 474.9 530 51.5
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 6.3e-130 468.8 555 49.4
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 8.3e-130 468.4 544 50.0
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.4e-129 467.6 542 49.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 6.5e-127 458.8 538 49.8
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 4.2e-126 456.1 546 50.2
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 5.5e-126 455.7 534 50.2
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 3.6e-125 453.0 546 51.5
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 5.2e-124 449.1 542 48.2
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-119 434.9 511 50.7
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.9e-119 433.3 535 48.4
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.9e-119 433.3 535 48.4
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.6e-117 426.4 499 51.9
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.6e-109 399.8 527 45.7
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.8e-108 397.5 485 49.9
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.4e-107 392.9 563 44.6
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.5e-107 392.1 485 49.7
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.3e-103 381.3 427 51.8
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 9.5e-102 375.2 430 52.6
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.3e-98 364.8 545 40.4
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 4.9e-98 362.8 447 48.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 4.3e-94 349.7 478 47.1
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.4e-76 291.6 341 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.2e-75 288.5 535 37.2
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 2.0e-75 287.7 303 56.4
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 1.3e-74 285.0 174 77.0
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.7e-74 284.6 267 60.7
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 3.2e-73 280.4 196 73.0
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 4.6e-72 276.6 198 66.2
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 6.0e-72 276.2 176 72.2
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 6.6e-71 272.7 218 66.1
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 3.3e-70 270.4 291 53.6
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 3.6e-69 266.9 275 55.6
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 3.6e-69 266.9 259 57.9
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.1e-68 265.4 193 69.4
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.8e-68 264.6 258 58.1
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 1.3e-66 258.5 500 36.6
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 2.2e-66 257.7 333 47.7
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 4.9e-66 256.5 195 69.2
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 4.2e-65 253.4 193 68.9
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 4.2e-65 253.4 194 66.5
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 9.3e-65 252.3 174 68.4
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.5e-62 245.0 176 64.8
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 1.1e-60 238.8 174 63.8
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 1.4e-60 238.4 276 53.3
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.4e-60 237.7 179 64.8
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 1.5e-59 235.0 186 60.2
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 2.0e-59 234.6 518 31.7
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 6.5e-58 229.6 174 63.2
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.9e-57 228.0 183 60.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 1.9e-57 228.0 365 39.2
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 2.5e-57 227.6 174 62.1
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 1.0e-55 222.2 176 59.1
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.9e-49 201.4 152 69.7
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 7.9e-48 196.1 176 57.4
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.8e-47 194.9 150 66.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.0e-43 181.4 174 51.7
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.7e-42 178.3 133 66.2
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 2.2e-42 177.9 127 66.1
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 2.9e-42 177.6 136 64.0
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 8.5e-42 176.0 130 61.5
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.3e-39 167.9 194 53.6
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.0e-38 164.9 143 60.1
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.4e-36 158.7 307 37.5
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.4e-33 148.7 86 82.6
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 5.5e-33 146.7 114 66.7
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.0e-30 138.3 91 67.0
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 3.7e-29 134.0 117 60.7
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 4.8e-29 133.7 137 46.7
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.4e-20 104.8 75 62.7
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 3.1e-20 104.4 168 32.7
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 1.2e-16 92.4 144 43.1
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 1.6e-16 92.0 697 22.2
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.8e-15 88.6 89 57.3
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 3.0e-15 87.8 58 63.8
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 6.8e-15 86.7 60 66.7
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.4e-14 84.3 43 86.0
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.3e-13 82.4 43 83.7
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.3e-13 82.4 43 83.7
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.2e-08 65.9 110 40.9
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 2.1e-08 65.1 34 85.3
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 8.0e-08 63.2 88 42.0
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 1.0e-07 62.8 57 56.1
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-07 62.4 51 45.1
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 1.8e-07 62.0 40 75.0
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 6.8e-07 60.1 88 39.8
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 8.8e-07 59.7 88 39.8
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 3.4e-06 57.8 57 49.1
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 9.8e-06 56.2 33 75.8


User provided reference genes

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