Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 1.3e-108 396.4 192 100.0
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 1.9e-107 392.5 192 99.0
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 5.3e-78 294.7 192 77.6
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 2.4e-70 269.2 172 77.9
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 3.4e-69 265.4 242 62.0
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 6.9e-54 214.5 190 60.0
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 1.5e-53 213.4 195 61.0
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 8.5e-52 207.6 188 59.6
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 2.5e-51 206.1 178 60.1
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 3.6e-50 202.2 191 56.5
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 1.4e-49 200.3 189 57.7
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 3.0e-49 199.1 181 60.2
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 3.9e-49 198.7 186 57.5
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 5.1e-49 198.4 160 62.5
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 8.8e-49 197.6 192 58.3
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 1.1e-48 197.2 187 57.8
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 2.0e-48 196.4 160 61.2
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 2.6e-48 196.1 163 60.7
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 2.6e-48 196.1 163 60.7
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 3.3e-48 195.7 205 56.1
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 3.3e-48 195.7 173 60.7
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 4.4e-48 195.3 189 55.0
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 7.4e-48 194.5 156 62.2
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 9.7e-48 194.1 197 56.9
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 9.7e-48 194.1 197 56.9
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 9.7e-48 194.1 165 63.0
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 1.7e-47 193.4 194 55.2
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 1.7e-47 193.4 183 59.0
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 3.7e-47 192.2 193 56.0
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 8.2e-47 191.0 151 63.6
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 8.2e-47 191.0 185 55.7
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 1.1e-46 190.7 168 58.9
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 1.4e-46 190.3 192 54.7
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 1.4e-46 190.3 200 58.5
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 2.4e-46 189.5 178 56.2
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 2.4e-46 189.5 185 55.7
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 2.4e-46 189.5 197 58.9
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 3.1e-46 189.1 193 55.4
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 4.1e-46 188.7 167 57.5
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 4.1e-46 188.7 193 55.4
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 5.3e-46 188.3 195 53.8
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 5.3e-46 188.3 164 62.2
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 9.1e-46 187.6 172 57.6
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 1.2e-45 187.2 161 58.4
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.2e-45 187.2 177 57.6
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 1.2e-45 187.2 177 57.6
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 1.2e-45 187.2 187 56.1
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 1.5e-45 186.8 171 57.3
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 1.5e-45 186.8 183 53.6
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 2.0e-45 186.4 195 53.8
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 3.4e-45 185.7 191 57.1
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 3.4e-45 185.7 162 61.1
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 5.9e-45 184.9 184 54.9
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 7.7e-45 184.5 195 52.8
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 7.7e-45 184.5 163 57.7
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 7.7e-45 184.5 163 57.7
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 7.7e-45 184.5 192 53.6
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 1.3e-44 183.7 191 55.5
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 1.3e-44 183.7 173 56.1
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 1.7e-44 183.3 203 50.7
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 2.2e-44 183.0 188 52.1
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 2.2e-44 183.0 205 54.1
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 2.9e-44 182.6 192 51.0
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 2.9e-44 182.6 195 52.3
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 5.0e-44 181.8 193 52.3
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 5.0e-44 181.8 193 52.3
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 6.5e-44 181.4 193 52.3
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 8.5e-44 181.0 183 53.6
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 8.5e-44 181.0 198 52.5
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 8.5e-44 181.0 180 52.8
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 1.1e-43 180.6 122 68.0
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 1.9e-43 179.9 194 53.6
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 2.5e-43 179.5 200 54.5
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 2.5e-43 179.5 196 52.0
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.2e-43 179.1 164 57.3
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 5.5e-43 178.3 155 60.0
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 5.5e-43 178.3 194 50.5
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 5.5e-43 178.3 183 52.5
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 7.2e-43 177.9 162 58.6
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 9.4e-43 177.6 180 55.0
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.6e-42 176.8 157 58.6
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 1.6e-42 176.8 196 53.6
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 2.1e-42 176.4 181 52.5
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 2.7e-42 176.0 193 50.3
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 4.7e-42 175.3 194 51.5
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 4.7e-42 175.3 199 51.3
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 4.7e-42 175.3 196 51.5
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 8.0e-42 174.5 183 54.6
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 1.0e-41 174.1 191 55.0
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 1.4e-41 173.7 188 50.0
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 3.0e-41 172.6 148 59.5
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 3.0e-41 172.6 199 51.3
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 3.9e-41 172.2 192 53.6
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 3.9e-41 172.2 164 54.9
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 1.5e-40 170.2 194 52.6
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 5.7e-40 168.3 121 66.1
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 4.8e-39 165.2 118 68.6
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 1.2e-37 160.6 118 61.0
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 1.7e-36 156.8 120 61.7
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 5.0e-36 155.2 184 47.8
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 5.0e-36 155.2 121 62.0
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 9.4e-35 151.0 130 57.7
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 6.1e-34 148.3 142 61.3
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 8.0e-34 147.9 112 61.6
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 1.8e-33 146.7 192 47.9
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 2.3e-33 146.4 192 47.9
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 2.3e-33 146.4 112 60.7
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 9.7e-32 141.0 109 60.6
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 7.7e-29 131.3 137 54.7
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 2.9e-28 129.4 140 52.9
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 6.1e-26 121.7 96 60.4
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 8.0e-26 121.3 122 50.0
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 5.2e-25 118.6 93 61.3
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 2.7e-21 106.3 64 71.9
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 7.7e-21 104.8 86 59.3
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 6.6e-20 101.7 64 70.3
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 1.6e-10 70.5 50 68.0
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 1.0e-09 67.8 35 85.7


User provided reference genes

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