Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0010900 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1615.9 778 100.0
Potri.015G013400 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1536.2 778 95.2
Potri.012G014900 Populus trichocarpa HOM05D005085 ORTHO05D006135 0.0e+00 1474.1 778 89.8
Sabra12G0017000 Salix brachista HOM05D005085 ORTHO05D006135 0.0e+00 1424.5 778 87.5
COL.COLO4_16758 Corchorus olitorius HOM05D005085 ORTHO05D006135 0.0e+00 1303.5 779 80.0
GSVIVG01038548001 Vitis vinifera HOM05D005085 ORTHO05D006135 0.0e+00 1298.1 755 80.8
Ciclev10018947m.g Citrus clementina HOM05D005085 ORTHO05D006135 0.0e+00 1294.3 779 78.6
Haze_00215 Corylus avellana HOM05D005085 ORTHO05D006135 0.0e+00 1290.4 784 77.9
Prupe.2G310400 Prunus persica HOM05D005085 ORTHO05D006135 0.0e+00 1288.5 780 78.1
TWI23G0498 Tripterygium wilfordii HOM05D005085 ORTHO05D006135 0.0e+00 1278.1 782 77.0
CiPaw.05G196500 Carya illinoinensis HOM05D005085 ORTHO05D006135 0.0e+00 1277.7 779 77.7
MD07G1288900 Malus domestica HOM05D005085 ORTHO05D006135 0.0e+00 1277.3 778 77.4
Thecc.03G198500 Theobroma cacao HOM05D005085 ORTHO05D006135 0.0e+00 1277.3 779 78.0
QL09p009347 Quercus lobata HOM05D005085 ORTHO05D006135 0.0e+00 1274.2 777 77.5
FvH4_7g31630 Fragaria vesca HOM05D005085 ORTHO05D006135 0.0e+00 1272.3 778 77.0
FAN06G1404 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1272.3 778 77.0
FAN03G3191 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1271.1 778 77.1
RcHm_v2.0_Chr1g0380701 Rosa chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1265.8 778 76.6
Glyma.06G128600 Glycine max HOM05D005085 ORTHO05D006135 0.0e+00 1263.4 770 76.4
Cfa016227 Carpinus fangiana HOM05D005085 ORTHO05D006135 0.0e+00 1263.1 779 76.8
FAN06G4927 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1261.9 778 76.7
Atru.chr12.2188 Acer truncatum HOM05D005085 ORTHO05D006135 0.0e+00 1261.5 779 76.6
Hma1.2p1_0404F.1_g145430 Hydrangea macrophylla HOM05D005085 ORTHO05D006135 0.0e+00 1257.7 778 76.7
FAN01G1488 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1256.5 778 76.2
Actinidia08648 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1255.7 778 77.0
CSS0032106 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1255.0 778 76.9
Manes.01G183000 Manihot esculenta HOM05D005085 ORTHO05D006135 0.0e+00 1252.3 778 77.4
Eucgr.K00374 Eucalyptus grandis HOM05D005085 ORTHO05D006135 0.0e+00 1250.0 778 76.3
VMungo1309G2271 Vigna mungo HOM05D005085 ORTHO05D006135 0.0e+00 1241.1 770 74.9
arahy.Tifrunner.gnm1.ann1.T9I2S7 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1239.2 770 75.5
Duzib068G1071 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1238.8 779 76.5
Lj1g0017393 Lotus japonicus HOM05D005085 ORTHO05D006135 0.0e+00 1237.6 770 75.5
arahy.Tifrunner.gnm1.ann1.ZR5QI2 Arachis hypogaea HOM05D005085 ORTHO05D006135 0.0e+00 1236.5 770 75.3
TAR375G0122 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1234.6 773 74.6
Cc02_g01600 Coffea canephora HOM05D005085 ORTHO05D006135 0.0e+00 1231.1 755 75.9
Lju170A22T15 Lonicera japonica HOM05D005085 ORTHO05D006135 0.0e+00 1228.0 778 75.1
Lalb_Chr08g0240261 Lupinus albus HOM05D005085 ORTHO05D006135 0.0e+00 1225.3 770 75.1
MBI06_g46249_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 0.0e+00 1223.4 780 74.1
Phvul.009G052800 Phaseolus vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1222.2 770 74.2
CSS0012677 Camellia sinensis var. sinensis HOM05D005085 ORTHO05D006135 0.0e+00 1220.3 778 74.9
CANSAT21G1132 Cannabis sativa HOM05D005085 ORTHO05D006135 0.0e+00 1216.4 778 75.2
Cpa.g.sc3.82 Carica papaya HOM05D005085 ORTHO05D006135 0.0e+00 1214.5 795 73.0
Nitab4.5_0010146g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1214.1 755 75.1
TAR629G3137 Trochodendron aralioides HOM05D005085 ORTHO05D006135 0.0e+00 1213.7 755 76.2
PGR142G4232 Punica granatum HOM05D005085 ORTHO05D006135 0.0e+00 1211.8 778 74.2
Sopen03g023080 Solanum pennellii HOM05D005085 ORTHO05D006135 0.0e+00 1211.8 778 73.5
FAN10G0692 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1208.4 778 74.4
FAN10G4178 Fragaria x ananassa HOM05D005085 ORTHO05D006135 0.0e+00 1208.4 778 74.4
Nitab4.5_0005599g0010 Nicotiana tabacum HOM05D005085 ORTHO05D006135 0.0e+00 1208.4 755 74.4
Solyc03g083330.3 Solanum lycopersicum HOM05D005085 ORTHO05D006135 0.0e+00 1206.4 778 73.1
PGSC0003DMG400009126 Solanum tuberosum HOM05D005085 ORTHO05D006135 0.0e+00 1201.0 755 74.4
vmacro06534 Vaccinium macrocarpon HOM05D005085 ORTHO05D006135 0.0e+00 1199.5 779 73.4
Rhsim03G0208500 Rhododendron simsii HOM05D005085 ORTHO05D006135 0.0e+00 1198.3 779 74.2
CAN.G968.3 Capsicum annuum HOM05D005085 ORTHO05D006135 0.0e+00 1195.6 778 72.2
Gohir.A05G414800 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1194.5 779 74.2
Psat5g078640 Pisum sativum HOM05D005085 ORTHO05D006135 0.0e+00 1193.3 768 72.9
Medtr3g091420 Medicago truncatula HOM05D005085 ORTHO05D006135 0.0e+00 1191.0 759 72.9
Duzib205G0228 Durio zibethinus HOM05D005085 ORTHO05D006135 0.0e+00 1190.6 705 80.3
MELO3C005886.2 Cucumis melo HOM05D005085 ORTHO05D006135 0.0e+00 1186.8 778 72.6
CsaV3_5G000500 Cucumis sativus L. HOM05D005085 ORTHO05D006135 0.0e+00 1186.0 778 72.5
MSTRG.27029 Avicennia marina HOM05D005085 ORTHO05D006135 0.0e+00 1170.2 778 71.2
TPR.G19373 Trifolium pratense HOM05D005085 ORTHO05D006135 0.0e+00 1168.3 801 69.4
Ca_16704_v3 Cicer arietinum L. HOM05D005085 ORTHO05D006135 0.0e+00 1166.0 771 71.1
Gohir.1Z049319 Gossypium hirsutum HOM05D005085 ORTHO05D006135 0.0e+00 1166.0 780 73.5
EL10Ac3g05287 Beta vulgaris HOM05D005085 ORTHO05D006135 0.0e+00 1165.6 783 71.4
Sc19g0000870 Simmondsia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1164.8 780 70.1
Nn1g00241 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1162.5 775 71.7
DCAR_008919 Daucus carota HOM05D005085 ORTHO05D006135 0.0e+00 1161.4 755 70.7
Hund11663 Selenicereus undatus HOM05D005085 ORTHO05D006135 0.0e+00 1161.4 789 70.7
SalBow4G0231 Salvia bowleyana HOM05D005085 ORTHO05D006135 0.0e+00 1155.6 769 71.3
Oeu060983.2 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1154.4 796 69.6
Sed0021974 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1151.3 756 72.1
Ah.07g205630 Amaranthus hybridus HOM05D005085 ORTHO05D006135 0.0e+00 1149.8 801 69.5
Oeu037073.1 Olea europaea HOM05D005085 ORTHO05D006135 0.0e+00 1140.6 755 71.0
ClCG01G000430 Citrullus lanatus HOM05D005085 ORTHO05D006135 0.0e+00 1140.2 818 67.4
Migut.F01031 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1139.4 782 71.0
HanXRQChr04g0100521 Helianthus annuus HOM05D005085 ORTHO05D006135 0.0e+00 1136.7 771 70.6
ATR0602G298 Amborella trichopoda HOM05D005085 ORTHO05D006135 0.0e+00 1136.3 770 69.7
PSO384G0679 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1135.9 779 70.6
Actinidia34217 Actinidia chinensis HOM05D005085 ORTHO05D006135 0.0e+00 1135.2 713 75.7
Migut.F00216 Erythranthe guttata HOM05D005085 ORTHO05D006135 0.0e+00 1134.8 755 71.3
CDE04G2343 Ceratophyllum demersum HOM05D005085 ORTHO05D006135 0.0e+00 1130.9 746 70.8
PSO135G0649 Papaver somniferum HOM05D005085 ORTHO05D006135 0.0e+00 1128.2 779 69.8
SGA_v2.0_scaffold192G40551 Striga asiatica HOM05D005085 ORTHO05D006135 0.0e+00 1125.5 784 68.5
Dinv35331 Davidia involucrata HOM05D005085 ORTHO05D006135 0.0e+00 1120.9 661 79.6
Lsat_1_v5_gn_2_136081 Lactuca sativa HOM05D005085 ORTHO05D006135 0.0e+00 1115.1 770 69.5
Nn3g18991 Nelumbo nucifera HOM05D005085 ORTHO05D006135 0.0e+00 1111.3 769 69.8
THA.LOC104814927 Tarenaya hassleriana HOM05D005085 ORTHO05D006135 0.0e+00 1088.9 759 67.9
Sp2g23110 Schrenkiella parvula HOM05D005085 ORTHO05D006135 0.0e+00 1082.8 750 69.1
Aa31LG11G3490 Aethionema arabicum HOM05D005085 ORTHO05D006135 0.0e+00 1079.7 758 67.2
Sed0008428 Sechium edule HOM05D005085 ORTHO05D006135 0.0e+00 1079.7 779 66.5
AT5G24260 Arabidopsis thaliana HOM05D005085 ORTHO05D006135 0.0e+00 1078.2 749 69.0
Carub.0006s2201 Capsella rubella HOM05D005085 ORTHO05D006135 0.0e+00 1076.6 749 68.6
Aqoxy7G00083 Aquilegia oxysepala HOM05D005085 ORTHO05D006135 5.3e-312 1074.7 779 66.2
AL6G35670 Arabidopsis lyrata HOM05D005085 ORTHO05D006135 5.3e-312 1074.3 744 69.2
Thhalv10003701m.g Eutrema salsugineum HOM05D005085 ORTHO05D006135 3.7e-311 1071.2 743 69.2
BcaC04g23536 Brassica carinata HOM05D005085 ORTHO05D006135 4.8e-311 1070.8 749 67.4
BolC9t53643H Brassica oleracea HOM05D005085 ORTHO05D006135 4.8e-311 1070.8 749 67.4
C09p07310 Brassica napus HOM05D005085 ORTHO05D006135 3.4e-309 1064.7 749 67.0
Zm00001eb237090 Zea mays HOM05D005085 ORTHO05D006135 1.7e-308 1062.4 798 64.3
A09p06550 Brassica napus HOM05D005085 ORTHO05D006135 2.9e-308 1061.6 747 66.9
BraA09t36300Z Brassica rapa HOM05D005085 ORTHO05D006135 3.2e-307 1058.1 747 66.9
BcaB04g19831 Brassica carinata HOM05D005085 ORTHO05D006135 9.3e-307 1056.6 749 67.2
Manes.02G143100 Manihot esculenta HOM05D005085 ORTHO05D006135 1.4e-302 1042.7 596 81.2
ECA238G3029 Erigeron canadensis HOM05D005085 ORTHO05D006135 9.9e-301 1036.6 739 68.7
Peaxi162Scf00717g00321 Petunia axillaris HOM05D005085 ORTHO05D006135 3.8e-300 1034.6 758 65.0
SEGI_15573 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 8.7e-297 1023.5 752 64.0
Mapoly0005s0073 Marchantia polymorpha HOM05D005085 ORTHO05D006135 6.2e-295 1017.3 784 61.1
SMO334G0022 Selaginella moellendorffii HOM05D005085 ORTHO05D006135 1.2e-293 1013.1 759 63.0
Glyma.04G236000 Glycine max HOM05D005085 ORTHO05D006135 1.3e-292 1009.6 596 77.5
AUR62019399 Chenopodium quinoa HOM05D005085 ORTHO05D006135 6.0e-290 1000.7 788 63.2
AUR62006093 Chenopodium quinoa HOM05D005085 ORTHO05D006135 1.8e-286 989.2 629 73.6
Pp3c3_30620 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.1e-278 963.4 780 59.2
MBI06_g41630_MAGBIO Magnolia biondii HOM05D005085 ORTHO05D006135 1.0e-276 956.8 714 66.1
Pp3c8_9480 Physcomitrium patens HOM05D005085 ORTHO05D006135 1.0e-276 956.8 761 60.3
Gorai.012G002400 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.5e-272 943.0 552 79.5
Gohir.D04G001366 Gossypium hirsutum HOM05D005085 ORTHO05D006135 5.7e-264 914.4 546 78.4
Os02g0290600 Oryza sativa ssp. japonica HOM05D005085 ORTHO05D006135 1.4e-262 909.8 597 69.5
Oeu060984.1 Olea europaea HOM05D005085 ORTHO05D006135 1.7e-244 849.7 572 70.1
SEGI_29845 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 9.8e-240 833.9 557 68.4
AagrBONN_evm.TU.Sc2ySwM_368.3337 Anthoceros agrestis HOM05D005085 ORTHO05D006135 1.0e-233 813.9 568 65.3
CARHR189270 Cardamine hirsuta HOM05D005085 ORTHO05D006135 3.3e-227 792.3 559 67.6
HPP92_002922 Vanilla planifolia HOM05D005085 ORTHO05D006135 4.0e-209 732.3 553 63.1
CBR_g26168 Chara braunii HOM05D005085 ORTHO05D006135 1.1e-203 714.1 602 55.0
PRCOL_00001990 Prasinoderma coloniale HOM05D005085 ORTHO05D006135 2.2e-199 699.9 789 45.4
SEGI_31502 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 6.4e-199 698.4 606 56.1
MCO02G195 Micromonas commoda HOM05D005085 ORTHO05D006135 1.1e-147 528.1 782 39.0
SEGI_36069 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 2.1e-117 427.6 382 54.5
Lj1A1019T47 Lonicera japonica HOM05D005085 ORTHO05D006135 4.8e-77 293.5 264 58.0
CARHR189280 Cardamine hirsuta HOM05D005085 ORTHO05D006135 1.1e-76 292.4 187 74.3
BcaB04g18355 Brassica carinata HOM05D005085 ORTHO05D006135 8.7e-63 246.1 223 57.4
HPP92_028640 Vanilla planifolia HOM05D005085 ORTHO05D006135 4.2e-49 200.7 272 47.8
Cfa026592 Carpinus fangiana HOM05D005085 ORTHO05D006135 3.8e-42 177.6 629 24.0
Cfa024188 Carpinus fangiana HOM05D005085 ORTHO05D006135 7.9e-40 169.9 614 23.6
Lj1C1017G3 Lonicera japonica HOM05D005085 ORTHO05D006135 1.5e-38 165.6 246 40.2
SEGI_01874 Sequoiadendron giganteum HOM05D005085 ORTHO05D006135 6.3e-29 133.7 119 53.8
HPP92_002923 Vanilla planifolia HOM05D005085 ORTHO05D006135 3.2e-25 121.3 93 66.7
Ah.03g137970 Amaranthus hybridus HOM05D005085 ORTHO05D006135 1.4e-20 105.9 214 38.3
HPP92_002921 Vanilla planifolia HOM05D005085 ORTHO05D006135 9.1e-20 103.2 52 86.5
Gohir.D02G140050 Gossypium hirsutum HOM05D003289 ORTHO05D004594 2.7e-19 101.7 57 86.0
Gorai.005G156700 Gossypium raimondii HOM05D003289 ORTHO05D004594 1.0e-18 99.8 57 84.2
HPP92_028641 Vanilla planifolia HOM05D005085 ORTHO05D006135 2.7e-16 91.7 120 47.5
MD01G1219200 Malus domestica HOM05D005085 ORTHO05D006135 1.4e-15 89.4 65 64.6
Gohir.D10G185350 Gossypium hirsutum HOM05D005085 ORTHO05D006135 1.2e-14 86.3 46 80.4
Gorai.011G207800 Gossypium raimondii HOM05D005085 ORTHO05D006135 1.2e-14 86.3 46 80.4
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 5.4e-12 77.4 210 28.6
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 7.0e-12 77.0 228 26.3
Lj1C1016T12 Lonicera japonica HOM05D005085 ORTHO05D006135 2.7e-11 75.1 139 41.0
Lj1C1016T11 Lonicera japonica HOM05D005085 ORTHO05D006135 1.7e-10 72.4 41 75.6
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 3.8e-10 71.2 228 27.2
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 3.8e-10 71.2 259 22.8
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 3.8e-10 71.2 234 25.2
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.5e-09 69.3 237 26.6
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 1.9e-09 68.9 220 27.7
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 2.5e-09 68.6 325 28.0
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 3.3e-09 68.2 237 23.6
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.6e-08 65.9 215 27.4
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.6e-08 65.9 195 25.6
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 3.6e-08 64.7 270 23.3
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 3.6e-08 64.7 257 23.3
Gorai.004G093300 Gossypium raimondii HOM05D001074 ORTHO05D001188 4.7e-08 64.3 34 79.4
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 4.7e-08 64.3 217 24.0
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 6.1e-08 63.9 215 27.0
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 1.0e-07 63.2 270 24.4
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 2.3e-07 62.0 274 25.2
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 4.0e-07 61.2 253 24.5
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 5.2e-07 60.8 263 28.9
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 6.8e-07 60.5 221 24.0
unitig_748.g8538 Utricularia gibba HOM05D005085 ORTHO05D006135 1.5e-06 59.3 37 67.6
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 2.0e-06 58.9 187 25.7
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 2.6e-06 58.5 268 26.1
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 2.6e-06 58.5 275 26.9
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 3.4e-06 58.2 268 26.5
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 5.7e-06 57.4 261 27.6
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 5.7e-06 57.4 131 32.8
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 7.5e-06 57.0 261 26.4
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 7.5e-06 57.0 262 26.0
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 9.8e-06 56.6 261 26.1


User provided reference genes

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