Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 2.4e-140 502.3 281 100.0
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 1.9e-124 449.5 275 92.0
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 3.8e-101 372.1 284 78.2
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 3.6e-91 339.0 276 72.5
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 3.1e-79 299.3 276 67.0
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 8.6e-45 184.9 278 51.8
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 4.3e-44 182.6 289 48.1
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 3.6e-43 179.5 289 47.1
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 4.7e-43 179.1 286 49.7
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.2e-38 164.5 277 45.5
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 1.2e-38 164.5 277 45.5
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 3.9e-37 159.5 278 47.1
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 1.1e-36 157.9 250 49.2
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.4e-31 141.0 293 43.7
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.4e-31 141.0 257 42.8
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.4e-31 141.0 257 42.8
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.4e-31 141.0 257 42.8
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 1.9e-31 140.6 287 44.3
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 1.9e-31 140.6 291 38.5
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 4.1e-31 139.4 278 42.1
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-28 131.3 264 40.2
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.5e-28 131.0 267 40.4
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 1.9e-28 130.6 270 40.4
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 4.3e-28 129.4 277 39.0
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 7.3e-28 128.6 252 39.7
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 1.6e-27 127.5 266 40.2
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 1.6e-27 127.5 279 39.4
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.1e-27 127.1 285 39.6
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 4.0e-26 122.9 280 42.9
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 9.0e-26 121.7 286 37.4
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 9.0e-26 121.7 286 42.3
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.5e-25 120.9 277 37.2
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.5e-25 120.9 276 37.3
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 9.9e-25 118.2 282 36.9
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.2e-24 117.1 270 35.6
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 2.2e-24 117.1 286 35.3
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 3.8e-24 116.3 285 38.2
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.4e-23 114.4 264 42.0
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 5.4e-23 112.5 290 37.6
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 5.4e-23 112.5 286 35.0
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.2e-22 111.3 291 39.2
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 1.2e-22 111.3 284 34.5
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.5e-22 109.8 283 36.4
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 4.6e-22 109.4 303 38.6
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 6.0e-22 109.0 292 36.6
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 7.8e-22 108.6 269 34.9
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.7e-21 107.5 267 35.6
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 3.9e-21 106.3 255 39.6
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 3.9e-21 106.3 275 40.0
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 8.7e-21 105.1 177 42.4
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 1.5e-20 104.4 263 35.0
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.5e-20 103.6 280 34.6
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 2.5e-20 103.6 274 36.1
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 4.3e-20 102.8 258 35.7
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 7.3e-20 102.1 285 31.9
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.3e-19 101.3 297 36.0
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.6e-19 100.9 241 38.6
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 4.8e-19 99.4 272 34.2
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 4.8e-19 99.4 278 35.6
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 6.2e-19 99.0 276 34.4
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 8.1e-19 98.6 250 36.4
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 1.4e-18 97.8 252 34.5
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 4.0e-18 96.3 269 37.5
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 5.3e-18 95.9 256 34.0
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 9.0e-18 95.1 254 35.0
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 2.0e-17 94.0 248 35.1
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 2.0e-17 94.0 286 32.9
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 9.9e-17 91.7 255 32.5
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 9.9e-17 91.7 240 35.0
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 9.9e-17 91.7 260 32.7
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 2.2e-16 90.5 238 34.9
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 2.9e-16 90.1 239 33.5
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 3.8e-16 89.7 261 33.3
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 3.8e-16 89.7 249 33.3
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 3.8e-16 89.7 251 33.9
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 4.9e-16 89.4 250 35.2
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 6.4e-16 89.0 243 32.9
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 8.4e-16 88.6 242 32.6
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.1e-15 88.2 131 45.8
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.4e-15 87.8 245 35.1
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 4.2e-15 86.3 255 32.2
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 1.6e-14 84.3 281 31.0
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 7.9e-14 82.0 262 33.2
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 7.9e-14 82.0 255 30.6
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 1.0e-13 81.6 204 37.7
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 1.8e-13 80.9 304 36.5
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 5.6e-12 75.9 242 37.6
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 1.3e-11 74.7 272 33.1
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.3e-11 74.7 279 32.3
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 1.6e-11 74.3 251 33.5
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 2.8e-11 73.6 275 32.0
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 4.8e-11 72.8 262 34.4
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 6.2e-11 72.4 229 35.8
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.4e-10 71.2 226 32.3
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.4e-10 71.2 272 32.7
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 1.8e-10 70.9 276 32.2
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 1.8e-10 70.9 276 32.6
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.8e-10 70.9 282 32.3
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 9.0e-10 68.6 262 34.0
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 9.0e-10 68.6 285 30.5
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.5e-09 67.8 179 38.0
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 4.9e-08 62.8 276 29.3
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 8.4e-08 62.0 257 29.6
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.1e-07 61.6 272 29.8
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 1.2e-06 58.2 284 31.0
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 3.5e-06 56.6 235 34.0


User provided reference genes

Program Settings