Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0002900 Salix brachista HOM05D008930 ORTHO05D011101 2.8e-100 368.6 185 100.0
Potri.015G004300 Populus trichocarpa HOM05D008930 ORTHO05D011101 1.5e-45 186.8 102 89.2
vmacro06460 Vaccinium macrocarpon HOM05D008930 ORTHO05D011101 7.4e-29 131.3 96 66.7
Haze_00319 Corylus avellana HOM05D008930 ORTHO05D011101 2.0e-26 123.2 104 60.6
CiPaw.05G207300 Carya illinoinensis HOM05D008930 ORTHO05D011101 8.5e-25 117.9 106 55.7
Rhsim03G0217200 Rhododendron simsii HOM05D008930 ORTHO05D011101 5.5e-24 115.2 89 65.2
Thecc.03G210900 Theobroma cacao HOM05D008930 ORTHO05D011101 1.6e-23 113.6 102 56.9
TAR374G0067 Trochodendron aralioides HOM05D008930 ORTHO05D011101 1.6e-23 113.6 105 56.2
Hma1.2p1_0415F.1_g148300 Hydrangea macrophylla HOM05D008930 ORTHO05D011101 2.7e-23 112.8 79 64.6
Hma1.2p1_1867F.1_g305920 Hydrangea macrophylla HOM05D008930 ORTHO05D011101 2.7e-23 112.8 79 64.6
Actinidia34280 Actinidia chinensis HOM05D008930 ORTHO05D011101 4.7e-23 112.1 96 59.4
QL09p006519 Quercus lobata HOM05D008930 ORTHO05D011101 4.7e-23 112.1 100 55.0
Lsat_1_v5_gn_8_3980 Lactuca sativa HOM05D008930 ORTHO05D011101 1.8e-22 110.2 90 58.9
Prupe.2G320800 Prunus persica HOM05D008930 ORTHO05D011101 1.8e-22 110.2 100 53.0
Oeu031968.1 Olea europaea HOM05D008930 ORTHO05D011101 3.0e-22 109.4 102 53.9
MBI04_g27767_MAGBIO Magnolia biondii HOM05D008930 ORTHO05D011101 5.2e-22 108.6 89 59.6
Hma1.2p1_0115F.1_g055620 Hydrangea macrophylla HOM05D008930 ORTHO05D011101 6.7e-22 108.2 89 57.3
MSTRG.8597 Avicennia marina HOM05D008930 ORTHO05D011101 2.0e-21 106.7 95 55.8
MBI04_g38995_MAGBIO Magnolia biondii HOM05D008930 ORTHO05D011101 2.6e-21 106.3 82 63.4
AUR62005961 Chenopodium quinoa HOM05D008930 ORTHO05D011101 3.3e-21 105.9 79 58.2
AUR62028105 Chenopodium quinoa HOM05D008930 ORTHO05D011101 3.3e-21 105.9 93 49.5
PGSC0003DMG400027103 Solanum tuberosum HOM05D008930 ORTHO05D011101 3.3e-21 105.9 92 57.6
MBI12_g45761_MAGBIO Magnolia biondii HOM05D008930 ORTHO05D011101 2.8e-20 102.8 81 61.7
Sopen06g029390 Solanum pennellii HOM05D008930 ORTHO05D011101 6.3e-20 101.7 92 55.4
Nn3g18757 Nelumbo nucifera HOM05D008930 ORTHO05D011101 8.2e-20 101.3 95 55.8
Nitab4.5_0000115g0120 Nicotiana tabacum HOM05D008930 ORTHO05D011101 2.4e-19 99.8 82 56.1
Aqoxy5G04368 Aquilegia oxysepala HOM05D008930 ORTHO05D011101 3.1e-19 99.4 80 55.0
CAN.G65.147 Capsicum annuum HOM05D008930 ORTHO05D011101 4.1e-19 99.0 92 52.2
Nitab4.5_0003561g0020 Nicotiana tabacum HOM05D008930 ORTHO05D011101 1.6e-18 97.1 82 57.3
DCAR_010565 Daucus carota HOM05D008930 ORTHO05D011101 2.0e-18 96.7 97 48.5
FvH4_7g33090 Fragaria vesca HOM05D008930 ORTHO05D011101 5.0e-17 92.0 103 49.5
Peaxi162Scf00815g10012 Petunia axillaris HOM05D008930 ORTHO05D011101 8.5e-17 91.3 80 56.2
FAN03G0228 Fragaria x ananassa HOM05D008930 ORTHO05D011101 1.1e-16 90.9 98 50.0
FAN10G1542 Fragaria x ananassa HOM05D008930 ORTHO05D011101 3.2e-16 89.4 98 49.0
Solyc06g073040.1 Solanum lycopersicum HOM05D008930 ORTHO05D011101 4.2e-16 89.0 80 55.0
ATR0332G067 Amborella trichopoda HOM05D008930 ORTHO05D011101 1.6e-15 87.0 85 51.8
FAN10G0670 Fragaria x ananassa HOM05D008930 ORTHO05D011101 3.6e-15 85.9 98 48.0
CANSAT21G0615 Cannabis sativa HOM05D008930 ORTHO05D011101 2.0e-13 80.1 92 45.7
SMO347G0570 Selaginella moellendorffii HOM05D001000 ORTHO05D011101 3.7e-12 75.9 93 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3088 Anthoceros agrestis HOM05D000401 ORTHO05D000252 3.5e-10 69.3 102 36.3
Gohir.D13G227175 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.2e-08 62.8 62 43.5
SGA_v2.0_scaffold13G06669 Striga asiatica HOM05D001000 ORTHO05D001896 4.2e-08 62.4 53 49.1
EL10Ac8g18493 Beta vulgaris HOM05D000401 ORTHO05D000252 7.2e-08 61.6 61 45.9
CsaV3_2G028590 Cucumis sativus L. HOM05D000401 ORTHO05D000252 7.2e-08 61.6 131 26.0
TAR375G0078 Trochodendron aralioides HOM05D001000 ORTHO05D022295 7.2e-08 61.6 114 33.3
SMO340G0153 Selaginella moellendorffii HOM05D000401 ORTHO05D000252 9.5e-08 61.2 52 46.2
Sc12g0004770 Simmondsia chinensis HOM05D000401 ORTHO05D000252 1.2e-07 60.8 62 40.3
Cc01_g08630 Coffea canephora HOM05D000401 ORTHO05D000252 1.6e-07 60.5 62 37.1
Gohir.A13G222326 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.6e-07 60.5 61 42.6
Ciclev10030088m.g Citrus clementina HOM05D000401 ORTHO05D000252 2.1e-07 60.1 131 30.5
Mapoly0170s0026 Marchantia polymorpha HOM05D000401 ORTHO05D000252 2.1e-07 60.1 69 36.2
AUR62010992 Chenopodium quinoa HOM05D000401 ORTHO05D000252 2.8e-07 59.7 61 42.6
AUR62021503 Chenopodium quinoa HOM05D000401 ORTHO05D000252 2.8e-07 59.7 61 42.6
MBI04_g08931_MAGBIO Magnolia biondii HOM05D005698 ORTHO05D007022 2.8e-07 59.7 84 34.5
AL6G31160 Arabidopsis lyrata HOM05D000401 ORTHO05D000252 3.6e-07 59.3 122 31.1
Gorai.013G257200 Gossypium raimondii HOM05D000401 ORTHO05D000252 3.6e-07 59.3 61 41.0
MBI11_g37136_MAGBIO Magnolia biondii HOM05D001000 ORTHO05D022295 4.7e-07 58.9 65 38.5
DCAR_017254 Daucus carota HOM05D000401 ORTHO05D000252 6.1e-07 58.5 82 35.4
Phvul.005G171200 Phaseolus vulgaris HOM05D005698 ORTHO05D007022 8.0e-07 58.2 63 42.9
Sopen11g027500 Solanum pennellii HOM05D000401 ORTHO05D000252 8.0e-07 58.2 60 36.7
PGSC0003DMG400019628 Solanum tuberosum HOM05D000401 ORTHO05D000252 8.0e-07 58.2 72 34.7
Ah.04g162500 Amaranthus hybridus HOM05D001000 ORTHO05D001896 1.0e-06 57.8 54 48.1
MSTRG.10391 Avicennia marina HOM05D001000 ORTHO05D001896 1.0e-06 57.8 53 47.2
A10p20070 Brassica napus HOM05D000401 ORTHO05D000252 1.0e-06 57.8 144 28.5
C09p56540 Brassica napus HOM05D000401 ORTHO05D000252 1.0e-06 57.8 144 28.5
BolC9t58519H Brassica oleracea HOM05D000401 ORTHO05D000252 1.0e-06 57.8 144 28.5
BraA10t44081Z Brassica rapa HOM05D000401 ORTHO05D000252 1.0e-06 57.8 144 28.5
Oeu009310.1 Olea europaea HOM05D001000 ORTHO05D001896 1.0e-06 57.8 53 45.3
Sabra01G0146400 Salix brachista HOM05D005698 ORTHO05D007022 1.0e-06 57.8 65 43.1
Sabra04G0135700 Salix brachista HOM05D000401 ORTHO05D000252 1.0e-06 57.8 61 41.0
SalBow4G1302 Salvia bowleyana HOM05D001000 ORTHO05D002976 1.0e-06 57.8 89 37.1
unitig_22.g5137 Utricularia gibba HOM05D001000 ORTHO05D001896 1.0e-06 57.8 53 47.2
HPP92_023653 Vanilla planifolia HOM05D000401 ORTHO05D000252 1.0e-06 57.8 57 45.6
CAN.G745.30 Capsicum annuum HOM05D000401 ORTHO05D000252 1.4e-06 57.4 76 34.2
Potri.001G180400 Populus trichocarpa HOM05D005698 ORTHO05D007022 1.4e-06 57.4 65 44.6
Sabra12G0005100 Salix brachista HOM05D008930 ORTHO05D349283 1.4e-06 57.4 81 42.0
Solyc11g068780.1 Solanum lycopersicum HOM05D000401 ORTHO05D000252 1.4e-06 57.4 60 36.7
HPP92_005541 Vanilla planifolia HOM05D005698 ORTHO05D007022 1.4e-06 57.4 82 36.6
Zm00001eb083640 Zea mays HOM05D001000 ORTHO05D001896 1.4e-06 57.4 71 38.0
Actinidia32059 Actinidia chinensis HOM05D000401 ORTHO05D000252 1.8e-06 57.0 66 36.4
CANSAT25G3680 Cannabis sativa HOM05D001000 ORTHO05D002976 1.8e-06 57.0 87 34.5
Nitab4.5_0000020g0380 Nicotiana tabacum HOM05D000401 ORTHO05D000252 1.8e-06 57.0 66 34.8
Nitab4.5_0000020g0390 Nicotiana tabacum HOM05D001000 ORTHO05D001896 1.8e-06 57.0 73 34.2
Pp3c18_15340 Physcomitrium patens HOM05D000401 ORTHO05D000252 1.8e-06 57.0 53 43.4
Thecc.08G024800 Theobroma cacao HOM05D000401 ORTHO05D000252 1.8e-06 57.0 88 29.5
TAR383G0214 Trochodendron aralioides HOM05D000062 ORTHO05D007022 1.8e-06 57.0 89 34.8
HPP92_002888 Vanilla planifolia HOM05D000401 ORTHO05D000252 1.8e-06 57.0 138 29.0
HPP92_002907 Vanilla planifolia HOM05D000401 ORTHO05D000252 1.8e-06 57.0 138 29.0
MSTRG.26611 Avicennia marina HOM05D000401 ORTHO05D000252 2.3e-06 56.6 66 36.4
MSTRG.5883 Avicennia marina HOM05D001000 ORTHO05D001896 2.3e-06 56.6 120 30.0
CAN.G574.38 Capsicum annuum HOM05D001000 ORTHO05D001896 2.3e-06 56.6 53 45.3
Hma1.2p1_0667F.1_g199700 Hydrangea macrophylla HOM05D001000 ORTHO05D002976 2.3e-06 56.6 176 30.1
MBI16_g36973_MAGBIO Magnolia biondii HOM05D000401 ORTHO05D000252 2.3e-06 56.6 58 41.4
Os04g0415100 Oryza sativa ssp. japonica HOM05D001000 ORTHO05D001896 2.3e-06 56.6 65 36.9
Pp3c1_37090 Physcomitrium patens HOM05D000401 ORTHO05D000252 2.3e-06 56.6 97 33.0
PGR004G2527 Punica granatum HOM05D000401 ORTHO05D000252 2.3e-06 56.6 66 39.4
GSVIVG01017105001 Vitis vinifera HOM05D005698 ORTHO05D007022 2.3e-06 56.6 89 34.8
Ah.09g231180 Amaranthus hybridus HOM05D000401 ORTHO05D000252 3.0e-06 56.2 61 42.6
ATR0733G013 Amborella trichopoda HOM05D000401 ORTHO05D000252 3.0e-06 56.2 69 37.7
BcaNung04863 Brassica carinata HOM05D000401 ORTHO05D000252 3.0e-06 56.2 81 33.3
CDE06G0635 Ceratophyllum demersum HOM05D001000 ORTHO05D001896 3.0e-06 56.2 55 43.6
Gohir.D13G226850 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.0e-06 56.2 60 40.0
MD02G1151100 Malus domestica HOM05D000401 ORTHO05D000252 3.0e-06 56.2 61 39.3
Peaxi162Scf00112g00092 Petunia axillaris HOM05D000401 ORTHO05D000252 3.0e-06 56.2 58 44.8
QL05p023538 Quercus lobata HOM05D005698 ORTHO05D007022 3.0e-06 56.2 65 41.5
SEGI_33718 Sequoiadendron giganteum HOM05D001000 ORTHO05D001896 3.0e-06 56.2 66 36.4
Thecc.09G276200 Theobroma cacao HOM05D000401 ORTHO05D000252 3.0e-06 56.2 61 41.0
TAR383G0966 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.0e-06 56.2 95 29.5
HPP92_007878 Vanilla planifolia HOM05D000401 ORTHO05D000252 3.0e-06 56.2 58 43.1
HPP92_007893 Vanilla planifolia HOM05D000401 ORTHO05D000252 3.0e-06 56.2 58 43.1
ATR0315G032 Amborella trichopoda HOM05D000401 ORTHO05D000252 4.0e-06 55.8 66 37.9
Aqoxy7G01740 Aquilegia oxysepala HOM05D005698 ORTHO05D007022 4.0e-06 55.8 146 26.0
MELO3C010932.2 Cucumis melo HOM05D000401 ORTHO05D000252 4.0e-06 55.8 131 25.2
Eucgr.J00537 Eucalyptus grandis HOM05D000401 ORTHO05D000252 4.0e-06 55.8 62 37.1
Gohir.D03G015900 Gossypium hirsutum HOM05D000401 ORTHO05D000252 4.0e-06 55.8 58 41.4
Gohir.D06G061200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 4.0e-06 55.8 145 30.3
Gorai.003G016100 Gossypium raimondii HOM05D000401 ORTHO05D000252 4.0e-06 55.8 58 41.4
Gorai.010G071300 Gossypium raimondii HOM05D000401 ORTHO05D000252 4.0e-06 55.8 146 30.8
MBI04_g22008_MAGBIO Magnolia biondii HOM05D000401 ORTHO05D000252 4.0e-06 55.8 103 31.1
SEGI_23260 Sequoiadendron giganteum HOM05D000401 ORTHO05D000252 4.0e-06 55.8 91 30.8
SGA_v2.0_scaffold1G00493 Striga asiatica HOM05D001000 ORTHO05D002976 4.0e-06 55.8 82 40.2
ATR0620G117 Amborella trichopoda HOM05D001000 ORTHO05D001896 5.2e-06 55.5 53 45.3
ATR0772G061 Amborella trichopoda HOM05D001000 ORTHO05D001896 5.2e-06 55.5 53 41.5
A02p05720 Brassica napus HOM05D000401 ORTHO05D000252 5.2e-06 55.5 142 28.2
BraA02t05524Z Brassica rapa HOM05D000401 ORTHO05D000252 5.2e-06 55.5 142 28.2
CsaV3_1G015160 Cucumis sativus L. HOM05D000479 ORTHO05D000252 5.2e-06 55.5 103 29.1
Nitab4.5_0000665g0030 Nicotiana tabacum HOM05D000401 ORTHO05D000252 5.2e-06 55.5 66 33.3
Nitab4.5_0001135g0140 Nicotiana tabacum HOM05D000401 ORTHO05D000252 5.2e-06 55.5 98 29.6
Peaxi162Scf00523g00073 Petunia axillaris HOM05D000401 ORTHO05D000252 5.2e-06 55.5 109 27.5
Potri.004G200500 Populus trichocarpa HOM05D000401 ORTHO05D000252 5.2e-06 55.5 61 41.0
Potri.009G161700 Populus trichocarpa HOM05D000401 ORTHO05D000252 5.2e-06 55.5 61 39.3
Prupe.7G152000 Prunus persica HOM05D000401 ORTHO05D000252 5.2e-06 55.5 61 39.3
SMO230G0037 Selaginella moellendorffii HOM05D000401 ORTHO05D000252 5.2e-06 55.5 59 45.8
TWI18G1188 Tripterygium wilfordii HOM05D005698 ORTHO05D007022 5.2e-06 55.5 103 33.0
Aqoxy4G02686 Aquilegia oxysepala HOM05D000401 ORTHO05D000252 6.8e-06 55.1 62 38.7
CDE02G3168 Ceratophyllum demersum HOM05D001000 ORTHO05D022295 6.8e-06 55.1 102 29.4
Dinv41606 Davidia involucrata HOM05D000401 ORTHO05D000252 6.8e-06 55.1 85 36.5
Glyma.15G014500 Glycine max HOM05D005698 ORTHO05D007022 6.8e-06 55.1 66 39.4
Gohir.D05G261700 Gossypium hirsutum HOM05D000401 ORTHO05D000252 6.8e-06 55.1 61 36.1
Gorai.009G273600 Gossypium raimondii HOM05D000401 ORTHO05D000252 6.8e-06 55.1 61 36.1
HanXRQChr12g0355601 Helianthus annuus HOM05D000401 ORTHO05D000252 6.8e-06 55.1 102 29.4
Lsat_1_v5_gn_5_184400 Lactuca sativa HOM05D001000 ORTHO05D002976 6.8e-06 55.1 86 32.6
Manes.08G031100 Manihot esculenta HOM05D001000 ORTHO05D001896 6.8e-06 55.1 86 33.7
Mapoly0142s0001 Marchantia polymorpha HOM05D000401 ORTHO05D000252 6.8e-06 55.1 113 30.1
Oeu055854.1 Olea europaea HOM05D000401 ORTHO05D000252 6.8e-06 55.1 66 39.4
Pp3c21_12190 Physcomitrium patens HOM05D000401 ORTHO05D000252 6.8e-06 55.1 74 33.8
Potri.010G241500 Populus trichocarpa HOM05D001000 ORTHO05D001896 6.8e-06 55.1 55 43.6
Sc08g0007570 Simmondsia chinensis HOM05D000401 ORTHO05D000252 6.8e-06 55.1 109 31.2
Solyc05g055220.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 6.8e-06 55.1 53 39.6
Sopen05g033660 Solanum pennellii HOM05D001000 ORTHO05D001896 6.8e-06 55.1 53 39.6
PGSC0003DMG400014511 Solanum tuberosum HOM05D000401 ORTHO05D000252 6.8e-06 55.1 108 28.7
THA.LOC104811110 Tarenaya hassleriana HOM05D000401 ORTHO05D000252 6.8e-06 55.1 107 30.8
Atru.chr3.3144 Acer truncatum HOM05D000401 ORTHO05D000252 8.8e-06 54.7 61 37.7
AT4G18830 Arabidopsis thaliana HOM05D000401 ORTHO05D000252 8.8e-06 54.7 81 33.3
BcaC03g13698 Brassica carinata HOM05D000401 ORTHO05D000252 8.8e-06 54.7 144 27.1
A02p23870 Brassica napus HOM05D005698 ORTHO05D007022 8.8e-06 54.7 93 36.6
CAN.G598.1 Capsicum annuum HOM05D000401 ORTHO05D000252 8.8e-06 54.7 109 27.5
CiPaw.09G018500 Carya illinoinensis HOM05D001000 ORTHO05D001896 8.8e-06 54.7 111 30.6
ClCG08G015220 Citrullus lanatus HOM05D000401 ORTHO05D000252 8.8e-06 54.7 131 29.0
Cc06_g06330 Coffea canephora HOM05D001000 ORTHO05D001896 8.8e-06 54.7 53 41.5
Gohir.A02G164300 Gossypium hirsutum HOM05D000401 ORTHO05D000252 8.8e-06 54.7 58 39.7
Lsat_1_v5_gn_5_102560 Lactuca sativa HOM05D000401 ORTHO05D000252 8.8e-06 54.7 125 28.8
Lsat_1_v5_gn_7_40800 Lactuca sativa HOM05D000401 ORTHO05D000252 8.8e-06 54.7 61 39.3
Lj1P260T36 Lonicera japonica HOM05D000401 ORTHO05D000252 8.8e-06 54.7 64 39.1
Medtr8g087530 Medicago truncatula HOM05D000401 ORTHO05D000252 8.8e-06 54.7 82 35.4
Nitab4.5_0000052g0030 Nicotiana tabacum HOM05D000401 ORTHO05D000252 8.8e-06 54.7 106 28.3
Nitab4.5_0002876g0020 Nicotiana tabacum HOM05D001000 ORTHO05D001896 8.8e-06 54.7 64 37.5
Pp3c2_4870 Physcomitrium patens HOM05D000401 ORTHO05D000252 8.8e-06 54.7 90 32.2
Pp3c2_4871 Physcomitrium patens HOM05D000401 ORTHO05D000252 8.8e-06 54.7 90 32.2
Sp7g17560 Schrenkiella parvula HOM05D000401 ORTHO05D000252 8.8e-06 54.7 81 33.3
SEGI_28373 Sequoiadendron giganteum HOM05D001000 ORTHO05D002976 8.8e-06 54.7 111 29.7
Solyc10g082050.1 Solanum lycopersicum HOM05D000401 ORTHO05D000252 8.8e-06 54.7 66 34.8
Sopen10g032560 Solanum pennellii HOM05D000401 ORTHO05D000252 8.8e-06 54.7 66 34.8


User provided reference genes

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