Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 6.0e-127 457.6 244 100.0
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 2.9e-105 385.6 222 91.4
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 8.5e-73 277.7 231 65.8
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 1.6e-71 273.5 232 65.9
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 3.6e-71 272.3 235 63.4
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 7.9e-71 271.2 222 66.2
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.8e-70 270.0 248 62.5
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 2.3e-70 269.6 232 64.7
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 3.9e-70 268.9 242 62.0
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 6.7e-70 268.1 225 64.9
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 6.7e-70 268.1 234 61.5
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 2.0e-69 266.5 222 63.1
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 2.0e-69 266.5 230 62.6
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 2.6e-69 266.2 227 64.3
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 2.2e-68 263.1 230 62.2
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 3.7e-68 262.3 238 63.0
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 3.7e-68 262.3 247 61.9
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 6.3e-68 261.5 238 62.2
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 8.2e-68 261.2 210 64.8
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.1e-67 260.8 211 64.0
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 2.4e-67 259.6 228 60.5
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 5.3e-67 258.5 221 63.8
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 1.5e-66 256.9 220 63.6
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 2.0e-66 256.5 226 62.4
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 5.9e-66 255.0 247 60.3
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 1.0e-65 254.2 228 63.2
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 1.3e-65 253.8 232 60.8
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.7e-65 253.4 242 61.2
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 2.2e-65 253.1 233 58.4
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 5.0e-65 251.9 223 60.5
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 8.5e-65 251.1 226 61.9
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.4e-64 250.4 223 63.2
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 2.5e-64 249.6 233 60.1
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 3.2e-64 249.2 233 60.5
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 4.2e-64 248.8 232 58.6
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 1.2e-63 247.3 189 67.2
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 2.1e-63 246.5 189 67.2
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 2.1e-63 246.5 206 68.0
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.7e-63 246.1 239 57.7
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 2.7e-63 246.1 211 62.1
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 2.7e-63 246.1 190 66.8
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 1.4e-62 243.8 238 61.3
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 2.3e-62 243.0 224 57.6
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 5.2e-62 241.9 221 61.5
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 8.8e-62 241.1 189 67.7
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.5e-61 240.4 213 60.1
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 3.3e-61 239.2 222 58.1
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 3.3e-61 239.2 199 64.8
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 7.4e-61 238.0 189 68.3
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 1.3e-60 237.3 222 57.7
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.7e-60 236.9 226 58.4
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 2.8e-60 236.1 226 58.8
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 3.7e-60 235.7 224 58.5
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 2.4e-59 233.0 192 63.0
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 2.4e-59 233.0 233 57.9
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 3.1e-59 232.6 221 56.6
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 4.1e-59 232.3 214 56.5
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 7.0e-59 231.5 225 57.3
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 3.5e-58 229.2 181 66.3
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 3.5e-58 229.2 218 59.2
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 4.5e-58 228.8 210 59.5
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.2e-57 226.5 213 56.8
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 2.9e-57 226.1 192 62.5
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.9e-57 226.1 229 55.0
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 8.5e-57 224.6 215 58.6
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 1.1e-56 224.2 206 60.7
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.5e-56 223.8 192 63.5
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 1.9e-56 223.4 210 60.0
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 2.5e-56 223.0 208 59.6
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 3.2e-56 222.6 206 60.7
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 4.2e-56 222.2 206 60.2
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 4.2e-56 222.2 232 56.9
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 7.2e-56 221.5 204 59.8
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 7.2e-56 221.5 163 68.7
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 2.7e-55 219.5 216 56.5
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 6.1e-55 218.4 206 59.7
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 5.2e-54 215.3 173 64.2
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 5.7e-53 211.8 273 48.4
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 9.7e-53 211.1 215 58.6
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 3.5e-50 202.6 148 68.2
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 1.0e-49 201.1 192 58.3
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 4.7e-47 192.2 231 51.1
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.8e-46 190.3 226 52.7
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 5.7e-45 185.3 186 55.9
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.8e-44 183.0 213 51.2
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 8.3e-44 181.4 217 52.5
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 4.1e-43 179.1 205 49.8
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 2.7e-42 176.4 196 50.5
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.3e-41 174.1 187 50.8
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 8.6e-41 171.4 125 67.2
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 1.1e-40 171.0 172 58.1
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 5.5e-40 168.7 175 52.6
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 2.1e-39 166.8 197 51.3
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 8.9e-38 161.4 168 48.8
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 3.5e-34 149.4 206 47.6
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 7.3e-32 141.7 210 41.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 2.8e-31 139.8 100 71.0
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.4e-30 137.5 134 56.0
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.2e-27 126.3 89 71.9
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 3.5e-26 122.9 91 70.3
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 2.8e-23 113.2 109 58.7
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.0e-21 107.1 159 46.5
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.4e-19 100.9 97 55.7
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 9.2e-19 98.2 219 34.7
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.6e-10 70.9 53 62.3
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 1.0e-09 68.2 45 73.3
Ah.05g167420 Amaranthus hybridus HOM05D007221 ORTHO05D009204 4.0e-06 56.2 42 59.5
Sabra04G0082200 Salix brachista HOM05D027686 ORTHO05D349675 5.2e-06 55.8 31 90.3
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 5.2e-06 55.8 62 54.8


User provided reference genes

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