Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 0.0e+00 2040.0 1078 100.0
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 0.0e+00 1704.1 1087 85.2
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 0.0e+00 1419.1 1089 73.4
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 2.6e-267 926.0 1093 53.2
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.8e-263 913.3 1023 55.6
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.2e-257 892.5 1095 50.4
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.8e-237 826.2 1093 47.2
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.4e-236 823.9 1093 47.6
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 7.0e-236 821.6 1092 48.1
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 8.5e-234 814.7 1094 47.4
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.0e-231 807.7 1092 47.0
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 2.3e-231 806.6 1093 46.9
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.6e-227 793.9 1090 47.2
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 6.5e-226 788.5 1097 47.3
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 3.7e-221 772.7 1097 47.7
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.8e-218 762.7 1090 44.0
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 7.2e-217 758.4 1090 44.0
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.6e-216 757.3 1090 43.9
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 1.8e-212 743.8 1130 45.8
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.2e-203 714.5 1100 44.4
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 8.9e-199 698.4 1084 43.8
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 6.4e-197 692.2 1072 46.0
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.3e-191 673.7 1083 43.7
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 4.4e-182 642.9 1052 43.2
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.7e-181 641.0 1080 42.3
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 2.1e-176 624.0 1088 40.8
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 2.7e-171 607.1 1096 41.5
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 3.9e-170 603.2 1085 40.1
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.4e-164 584.7 1091 40.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.9e-161 574.3 1107 39.0
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 9.6e-161 572.0 1091 40.2
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 3.1e-159 567.0 1098 39.5
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.7e-155 553.9 1095 39.9
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 1.9e-153 547.7 1131 37.7
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.5e-153 547.4 1121 36.7
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.4e-151 540.8 1085 38.5
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.3e-149 535.0 1098 38.3
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.2e-149 534.3 1132 35.9
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 5.5e-148 529.6 1137 35.9
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.1e-147 527.7 1098 38.3
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 2.7e-147 527.3 1120 38.0
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 3.0e-146 523.9 1130 38.4
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.2e-139 501.9 1095 38.8
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 6.1e-139 499.6 1108 35.5
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 3.0e-138 497.3 1097 36.6
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.7e-136 491.5 949 40.6
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 1.7e-136 491.5 1100 35.4
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 2.2e-136 491.1 1100 37.2
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.2e-136 491.1 1097 35.8
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 3.7e-136 490.3 1127 35.9
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 5.3e-135 486.5 1095 35.4
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.5e-134 485.0 1124 35.1
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 7.7e-134 482.6 1105 37.7
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 5.0e-133 479.9 1116 35.7
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.9e-132 478.0 882 41.2
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 7.2e-132 476.1 1109 35.3
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 1.5e-129 468.4 1095 36.1
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 2.9e-125 454.1 1102 35.4
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.1e-124 452.2 1098 34.4
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.4e-124 451.8 1103 35.2
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 7.2e-124 449.5 1078 35.0
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 4.7e-123 446.8 1104 33.9
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.7e-117 428.3 838 39.0
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.0e-114 419.1 1115 33.5
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 4.0e-114 417.2 1091 34.1
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.9e-110 403.3 1082 34.3
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.0e-109 400.2 1062 34.1
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 6.5e-109 399.8 1041 34.0
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 7.5e-105 386.3 1129 32.9
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 4.1e-103 380.6 1099 32.7
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.2e-97 362.5 1106 32.3
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.0e-94 351.7 462 49.8
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.0e-94 351.7 1096 30.6
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 3.5e-94 350.9 1084 31.1
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.0e-93 349.4 1084 30.9
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 9.8e-89 332.8 1111 31.0
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 5.4e-87 327.0 859 33.2
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.7e-85 322.0 1094 30.8
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 3.9e-85 320.9 1093 30.6
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 3.3e-84 317.8 1095 30.7
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 5.6e-84 317.0 1086 30.8
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 5.6e-84 317.0 1096 31.1
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 9.5e-84 316.2 1093 30.6
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 3.1e-82 311.2 1093 29.8
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 5.2e-82 310.5 1088 29.7
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.2e-81 309.3 1105 30.3
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 7.5e-81 306.6 1093 30.2
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 9.8e-81 306.2 1082 28.0
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 2.9e-80 304.7 1085 30.8
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.1e-79 302.8 1111 31.1
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 3.2e-79 301.2 1085 28.8
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 2.3e-77 295.0 1090 29.4
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.5e-76 291.6 804 34.1
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 3.3e-76 291.2 1090 30.3
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 4.3e-76 290.8 847 33.8
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 8.1e-75 286.6 1087 29.9
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 4.4e-73 280.8 965 30.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 4.6e-70 270.8 1081 29.0
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 4.7e-67 260.8 237 56.5
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 6.2e-67 260.4 1084 28.9
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 3.6e-59 234.6 1252 26.8
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 3.6e-59 234.6 1001 29.0
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 2.6e-57 228.4 384 42.4
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.3e-53 216.1 210 52.4
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.3e-51 209.5 419 36.8
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.4e-49 201.4 1082 27.2
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 4.6e-38 164.5 1051 25.4
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 7.9e-38 163.7 727 30.5
Atru.chr13.489 Acer truncatum HOM05D006788 ORTHO05D008265 3.0e-37 161.8 391 35.8
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 6.7e-37 160.6 122 62.3
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.1e-18 100.1 234 32.5
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 1.2e-17 96.7 1115 22.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.0e-16 93.6 965 22.3
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 1.1e-15 90.1 1118 21.7
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 1.1e-15 90.1 185 32.4
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 7.9e-14 84.0 232 33.2
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 7.9e-14 84.0 171 33.3
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.0e-13 83.6 167 34.1
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.6e-12 79.0 170 32.9
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 3.3e-12 78.6 230 27.0
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 5.7e-12 77.8 124 37.9
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 9.7e-12 77.0 938 22.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 9.7e-12 77.0 935 21.9
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.3e-11 76.6 267 29.6
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.2e-11 75.9 170 32.4
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.8e-11 75.5 170 32.4
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.8e-11 74.7 946 22.6
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 6.3e-11 74.3 911 21.4
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 8.2e-11 73.9 284 30.6
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 8.2e-11 73.9 243 31.7
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.1e-10 73.6 160 34.4
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.1e-10 73.6 168 31.0
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.4e-10 72.4 291 24.1
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.4e-10 72.4 234 30.3
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 3.1e-10 72.0 937 22.6
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.1e-10 72.0 247 31.2
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.1e-10 72.0 188 27.7
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.1e-10 71.6 243 31.3
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.1e-10 70.5 277 29.6
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 1.2e-09 70.1 218 26.1
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-09 70.1 124 35.5
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.5e-09 69.7 274 26.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 2.0e-09 69.3 207 30.0
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.6e-09 68.9 71 46.5
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 2.6e-09 68.9 414 24.2
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.5e-09 68.2 113 38.9
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 7.7e-09 67.4 968 21.5
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.7e-08 66.2 951 22.2
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.7e-08 66.2 958 20.6
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 6.5e-08 64.3 475 23.2
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 8.5e-08 63.9 277 24.5
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 8.5e-08 63.9 973 22.0
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 1.9e-07 62.8 207 27.1
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 1.9e-07 62.8 958 20.7
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.5e-07 62.4 963 20.9
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 3.2e-07 62.0 466 20.8
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 3.2e-07 62.0 958 21.9
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 4.2e-07 61.6 221 28.5
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 5.5e-07 61.2 997 22.4
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 5.5e-07 61.2 935 21.7
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 7.2e-07 60.8 956 20.1
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 9.4e-07 60.5 377 22.5
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 9.4e-07 60.5 167 30.5
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 1.2e-06 60.1 385 23.1
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 1.6e-06 59.7 246 28.9
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 2.7e-06 58.9 964 22.8
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.6e-06 58.5 197 31.0
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 6.1e-06 57.8 226 29.2


User provided reference genes

Program Settings