Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 2.2e-288 995.0 517 100.0
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.5e-260 901.7 520 91.2
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-178 630.2 521 66.0
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 3.2e-178 629.0 521 65.8
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-176 623.6 521 65.6
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-176 623.6 521 65.6
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 4.9e-163 578.6 528 60.8
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.1e-162 577.4 525 61.1
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 2.4e-162 576.2 524 58.8
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 7.1e-162 574.7 525 59.0
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 4.6e-161 572.0 520 59.8
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 1.3e-160 570.5 520 60.0
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 4.8e-158 562.0 523 60.0
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 2.2e-155 553.1 522 56.1
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 1.3e-152 543.9 521 56.8
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 8.7e-152 541.2 523 57.2
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 4.8e-150 535.4 524 55.2
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 4.8e-150 535.4 519 54.9
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 9.0e-149 531.2 520 53.7
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.9e-146 523.5 524 54.2
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 7.1e-146 521.5 518 52.9
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 1.6e-145 520.4 521 55.9
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 3.9e-144 515.8 518 51.9
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 1.9e-143 513.5 500 59.0
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 8.2e-142 508.1 511 53.4
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-141 507.3 493 57.0
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 5.3e-141 505.4 493 54.0
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 1.2e-140 504.2 509 53.8
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 1.5e-140 503.8 492 56.9
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 6.5e-139 498.4 525 52.6
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 1.1e-138 497.7 523 53.9
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.4e-138 497.3 513 52.2
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 1.9e-138 496.9 519 54.9
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 1.6e-137 493.8 526 51.9
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 1.6e-137 493.8 501 55.1
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 2.7e-137 493.0 520 54.4
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 4.6e-137 492.3 496 55.2
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 4.6e-137 492.3 515 52.4
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 1.3e-136 490.7 496 56.5
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 1.3e-136 490.7 499 53.1
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 3.0e-136 489.6 521 52.8
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.7e-134 483.8 495 53.7
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 3.7e-134 482.6 537 52.7
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 6.3e-134 481.9 520 52.1
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 2.4e-133 479.9 527 54.1
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 6.9e-133 478.4 522 50.6
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 1.2e-132 477.6 515 50.5
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.5e-132 477.2 520 50.4
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 3.8e-131 472.6 538 48.3
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 5.0e-131 472.2 500 52.8
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 5.0e-131 472.2 520 50.6
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 6.5e-131 471.9 521 53.2
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 6.5e-131 471.9 496 54.0
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 1.1e-130 471.1 512 53.3
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 1.2e-129 467.6 475 51.8
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 1.6e-129 467.2 438 55.9
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 4.7e-129 465.7 494 50.6
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 2.6e-127 459.9 521 51.8
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 3.3e-127 459.5 521 50.3
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 7.4e-127 458.4 518 47.9
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 8.2e-126 454.9 515 51.8
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 3.1e-125 453.0 497 51.3
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 6.9e-125 451.8 520 51.3
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 9.1e-125 451.4 519 50.9
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 2.0e-124 450.3 497 51.5
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 2.6e-124 449.9 521 50.5
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 4.5e-124 449.1 520 51.3
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 5.9e-124 448.7 525 48.2
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 7.7e-124 448.4 523 51.6
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 7.7e-124 448.4 501 52.5
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 1.0e-123 448.0 523 51.4
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 6.5e-123 445.3 519 48.6
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 8.5e-123 444.9 494 51.8
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 3.2e-122 443.0 506 50.8
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 5.5e-122 442.2 532 51.5
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 7.2e-122 441.8 521 51.8
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 3.6e-121 439.5 521 51.4
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 6.1e-121 438.7 389 58.1
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.4e-120 437.6 472 53.2
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 1.8e-120 437.2 522 50.6
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 6.7e-120 435.3 515 49.7
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 8.8e-120 434.9 519 49.1
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.1e-119 434.5 526 46.0
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 8.2e-118 428.3 525 46.5
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 3.5e-116 422.9 497 50.9
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 4.5e-116 422.5 493 50.3
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 4.5e-116 422.5 498 48.2
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.7e-115 420.6 497 50.5
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 2.9e-115 419.9 519 48.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.5e-114 416.8 518 43.4
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 1.6e-108 397.5 462 52.6
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 5.9e-108 395.6 518 46.5
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 7.7e-108 395.2 381 54.9
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 9.4e-106 388.3 269 69.9
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 8.3e-102 375.2 510 46.1
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 6.5e-99 365.5 499 44.1
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 3.7e-94 349.7 518 41.7
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 5.0e-91 339.3 348 52.9
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 2.5e-90 337.0 533 39.8
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 2.3e-83 313.9 393 44.8
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 2.8e-81 307.0 328 52.1
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 2.8e-81 307.0 348 46.6
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.3e-78 298.1 322 48.4
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 4.4e-71 273.1 198 68.2
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 4.4e-71 273.1 198 68.2
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 2.1e-60 237.7 197 67.0
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 2.6e-55 220.7 518 33.6
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 1.2e-52 211.8 535 30.7
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.3e-51 208.4 206 52.4
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 9.6e-50 202.2 506 32.4
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-48 198.4 175 65.7
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 2.6e-47 194.1 159 56.6
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 2.5e-42 177.6 425 29.9
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 6.2e-33 146.4 500 27.0
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 8.2e-25 119.4 171 37.4
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 7.4e-18 96.3 127 45.7
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 1.1e-16 92.4 119 47.1
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 3.1e-16 90.9 102 50.0
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 1.1e-13 82.4 123 40.7
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 2.1e-12 78.2 149 38.9
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 2.3e-11 74.7 149 37.6
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 5.1e-11 73.6 226 25.2
Actinidia33399 Actinidia chinensis HOM05D006455 ORTHO05D008098 2.4e-08 64.7 49 59.2
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 3.1e-08 64.3 118 39.0


User provided reference genes

Program Settings