Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 0.0e+00 1353.2 678 100.0
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 0.0e+00 1262.3 678 92.9
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 0.0e+00 1136.7 681 84.1
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.7e-272 942.6 704 70.9
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 7.9e-270 933.7 685 70.9
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.3e-267 926.4 683 69.4
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 3.1e-266 921.8 670 69.9
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 2.6e-265 918.7 688 69.2
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 7.7e-265 917.1 685 69.2
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 7.9e-262 907.1 685 67.6
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.4e-261 906.4 640 71.6
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 5.1e-261 904.4 684 68.4
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 8.8e-261 903.7 675 68.4
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.6e-257 892.1 683 67.5
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.7e-256 889.4 684 67.4
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.9e-256 888.6 684 67.3
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.5e-255 884.4 683 67.5
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.6e-246 855.1 686 64.6
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 4.7e-246 854.7 603 70.8
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 9.7e-244 847.0 689 64.7
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 2.4e-242 842.4 619 70.6
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.2e-240 835.9 753 59.6
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 6.8e-237 824.3 785 57.2
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 5.7e-236 821.2 678 62.4
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 6.3e-235 817.8 696 60.1
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 8.3e-235 817.4 720 59.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 4.1e-234 815.1 693 60.5
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.0e-233 812.8 665 63.5
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.9e-233 811.2 665 63.3
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 7.7e-233 810.8 695 61.2
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 5.5e-231 804.7 681 61.7
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 2.1e-230 802.7 691 59.9
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.4e-229 800.0 668 62.7
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.3e-229 799.3 690 60.0
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 4.0e-229 798.5 677 60.4
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 8.8e-229 797.3 703 59.0
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 2.0e-228 796.2 673 62.3
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.4e-228 795.4 721 59.1
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 7.5e-228 794.3 682 60.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.7e-227 793.1 648 63.3
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 2.8e-227 792.3 696 58.9
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.8e-227 792.3 670 61.9
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.3e-227 790.8 732 58.6
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.1e-226 790.4 679 60.4
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 5.4e-226 788.1 714 58.7
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.6e-225 786.6 714 58.7
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 4.5e-225 785.0 694 59.5
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 5.9e-225 784.6 703 58.0
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 7.7e-225 784.3 667 61.3
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.7e-225 784.3 730 58.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.7e-225 784.3 665 62.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.3e-224 783.5 669 60.7
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 2.3e-224 782.7 624 64.1
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.1e-223 780.4 687 59.5
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.1e-223 780.4 646 63.0
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 2.5e-223 779.2 682 60.7
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.2e-222 776.9 676 61.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 1.2e-222 776.9 676 58.9
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.1e-222 774.6 696 59.1
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 8.9e-221 770.8 692 59.0
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.2e-220 770.4 692 58.5
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.6e-220 769.2 694 59.2
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.6e-220 769.2 673 60.9
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 3.4e-220 768.8 745 56.8
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.5e-220 767.7 677 60.7
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 6.4e-219 764.6 692 58.2
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 8.3e-219 764.2 637 62.3
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 5.9e-217 758.1 694 58.2
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.7e-216 756.5 658 60.5
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.0e-216 755.7 618 63.8
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 6.2e-214 748.0 694 56.3
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 6.2e-214 748.0 693 58.4
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.2e-214 748.0 668 58.4
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 8.0e-214 747.7 552 69.4
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 8.0e-214 747.7 642 59.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.3e-213 746.1 659 60.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.5e-212 743.4 691 55.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 1.5e-212 743.4 664 57.7
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 4.4e-212 741.9 682 58.7
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 4.4e-212 741.9 634 60.3
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-210 736.5 650 59.7
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 4.1e-210 735.3 679 58.9
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 1.2e-209 733.8 679 58.8
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.6e-209 733.4 697 55.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 7.8e-209 731.1 678 58.3
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-208 730.3 692 56.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 5.6e-207 724.9 701 56.1
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 2.1e-206 723.0 677 57.8
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 4.4e-204 715.3 626 59.7
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 5.8e-204 714.9 700 55.3
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 5.8e-204 714.9 697 58.5
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.7e-203 713.4 640 57.7
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.2e-203 713.0 677 56.9
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 2.2e-203 713.0 662 57.7
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.4e-202 710.3 667 57.9
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.2e-202 709.1 663 57.5
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.7e-200 703.4 611 61.5
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.1e-199 700.7 690 53.9
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 3.3e-199 699.1 691 53.8
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 4.3e-199 698.7 648 58.3
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-197 694.1 576 62.5
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 6.8e-197 691.4 653 57.6
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 8.9e-197 691.0 757 51.5
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 3.4e-196 689.1 667 55.5
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 9.9e-196 687.6 693 53.5
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-195 687.2 693 53.5
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.7e-195 685.6 639 57.3
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.4e-194 682.9 648 56.8
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 3.2e-194 682.6 652 57.1
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.0e-192 677.6 584 61.6
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.9e-191 673.3 700 52.4
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.4e-189 666.4 636 56.4
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 7.6e-188 661.4 675 54.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.3e-187 660.6 653 54.5
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.7e-187 660.2 655 53.3
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 4.9e-187 658.7 666 54.4
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.4e-187 658.3 680 54.9
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.4e-186 657.1 650 55.1
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 3.0e-184 649.4 669 52.5
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 5.6e-183 645.2 674 55.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.8e-181 640.2 664 52.1
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.6e-180 636.3 665 51.7
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.9e-179 632.9 609 56.8
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 7.9e-177 624.8 657 52.8
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 8.7e-176 621.3 497 64.0
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 9.0e-173 611.3 663 50.2
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 3.5e-169 599.4 649 49.5
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 7.4e-167 591.7 677 48.2
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 2.5e-162 576.6 461 65.1
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 3.5e-161 572.8 708 47.5
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.4e-156 556.2 501 57.7
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 4.6e-153 545.8 669 49.0
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.6e-150 537.3 424 64.9
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 5.9e-148 528.9 493 55.4
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.4e-141 507.7 507 55.0
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.7e-135 485.0 406 61.6
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.8e-134 483.4 737 41.5
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.5e-122 443.7 649 41.8
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 2.1e-121 440.7 638 42.2
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.4e-120 438.0 639 41.8
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.4e-120 438.0 645 41.1
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.2e-120 436.0 672 40.3
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.1e-114 418.3 651 39.9
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.5e-108 396.7 664 40.8
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 4.5e-108 396.4 623 39.2
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 3.8e-107 393.3 736 38.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 4.3e-106 389.8 758 37.5
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 7.0e-101 372.5 652 38.3
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.7e-100 370.5 796 33.7
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.7e-94 351.3 598 37.0
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 4.9e-94 349.7 527 41.7
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 5.4e-93 346.3 494 42.5
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.9e-90 337.8 398 46.0
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 5.2e-88 329.7 744 32.1
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 9.9e-87 325.5 294 59.9
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.6e-81 308.1 518 38.8
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 4.7e-81 306.6 209 72.2
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.3e-78 298.5 213 71.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.4e-71 273.5 518 35.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 2.9e-62 244.2 335 41.8
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.1e-36 158.3 109 71.6
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.7e-35 153.3 270 38.1
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.4e-31 141.0 112 66.1
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 6.7e-27 126.7 183 41.5
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.9e-21 108.6 66 77.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.5e-21 108.2 109 54.1
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 2.1e-20 105.1 70 71.4
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.2e-12 79.3 152 34.9
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 1.6e-12 79.0 165 33.3
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 3.6e-12 77.8 52 71.2
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.5e-10 72.4 61 55.7
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.5e-10 72.4 69 55.1
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.1e-08 64.3 54 53.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 4.5e-07 60.8 48 60.4


User provided reference genes

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