Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.1e-162 576.6 292 100.0
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 4.5e-145 518.1 293 91.1
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 6.0e-142 507.7 293 89.1
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 2.9e-136 488.8 293 86.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.1e-130 470.3 302 81.1
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.8e-130 469.5 299 80.9
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 5.3e-130 468.0 302 79.8
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 1.5e-129 466.5 301 79.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 4.5e-129 464.9 302 79.1
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 8.4e-128 460.7 300 80.0
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 3.2e-127 458.8 302 77.8
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.2e-126 456.8 303 78.5
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 4.6e-126 454.9 302 78.1
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 7.9e-126 454.1 302 78.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.0e-125 453.8 302 78.1
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.8e-125 453.0 300 79.7
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.1e-124 450.3 301 78.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 7.4e-124 447.6 300 78.7
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 9.7e-124 447.2 303 77.2
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.6e-123 446.4 312 76.0
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.2e-123 444.1 303 76.9
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.1e-122 443.7 303 76.6
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.4e-122 443.4 301 76.1
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.4e-122 443.4 301 76.4
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 5.3e-122 441.4 302 76.2
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.6e-121 439.1 301 75.7
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 2.6e-121 439.1 288 79.5
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 4.5e-121 438.3 301 75.4
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 2.9e-120 435.6 303 76.9
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 3.8e-120 435.3 299 75.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 6.5e-120 434.5 301 74.4
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 6.5e-120 434.5 294 76.2
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.1e-119 433.7 302 77.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.6e-118 429.9 305 76.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 2.7e-118 429.1 294 76.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 3.6e-118 428.7 297 75.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.3e-117 426.0 301 75.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.1e-116 423.7 301 74.4
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.0e-116 422.9 303 72.9
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 3.3e-116 422.2 297 74.7
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 5.7e-116 421.4 294 73.8
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 7.4e-116 421.0 296 73.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.3e-115 420.2 296 75.3
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.8e-115 418.3 301 74.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-114 417.2 295 74.2
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 5.3e-114 414.8 301 72.8
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.0e-113 412.9 297 72.4
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.0e-113 412.9 301 73.4
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 2.6e-113 412.5 301 72.4
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.6e-113 412.5 296 73.6
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.7e-113 411.0 296 73.3
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.0e-112 410.6 296 73.3
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.0e-112 410.6 296 73.6
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.0e-112 410.6 299 73.9
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-112 410.2 301 72.1
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-112 410.2 297 72.4
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.7e-112 409.8 302 71.5
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.2e-112 409.5 272 78.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 5.0e-112 408.3 302 72.2
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.5e-112 407.9 291 75.3
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.5e-111 406.0 299 70.6
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.2e-111 405.2 310 70.6
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 1.2e-110 403.7 267 77.5
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.0e-109 400.6 302 70.5
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.4e-109 400.2 304 72.4
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.8e-109 399.8 291 73.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.0e-109 399.1 299 71.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 3.0e-109 399.1 302 70.5
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 3.9e-109 398.7 298 72.1
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 3.9e-109 398.7 323 67.8
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.9e-109 398.7 320 67.8
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 3.9e-109 398.7 267 76.8
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.9e-109 398.7 299 70.9
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 6.7e-109 397.9 303 70.6
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 8.8e-109 397.5 299 69.6
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 1.1e-108 397.1 302 70.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 1.1e-108 397.1 302 71.2
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 1.5e-108 396.7 268 76.5
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-108 396.0 299 69.6
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 2.6e-108 396.0 350 65.1
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 3.3e-108 395.6 299 69.2
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 7.4e-108 394.4 300 70.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 7.4e-108 394.4 292 69.9
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 1.3e-107 393.7 268 75.7
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.7e-107 393.3 289 73.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.8e-107 392.5 304 70.4
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 4.8e-107 391.7 257 79.4
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 8.2e-107 391.0 297 70.0
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.8e-106 389.8 297 69.7
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 7.0e-106 387.9 300 70.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 9.1e-106 387.5 254 79.9
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 1.3e-104 383.6 294 70.4
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 3.8e-104 382.1 289 72.0
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 5.0e-104 381.7 296 69.9
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.5e-104 380.9 300 67.0
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 8.5e-104 380.9 269 73.2
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.1e-103 380.6 291 71.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.5e-103 380.2 269 72.9
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 7.2e-103 377.9 259 79.2
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 9.4e-103 377.5 305 68.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.2e-102 377.1 269 74.0
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.6e-102 376.7 216 86.6
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.4e-101 373.6 300 68.0
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 5.2e-101 371.7 273 73.3
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 8.2e-99 364.4 246 78.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.8e-98 363.2 244 78.3
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.1e-98 362.5 246 78.0
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 4.1e-98 362.1 246 78.0
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.0e-98 361.3 262 76.3
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.0e-96 357.5 316 63.6
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-96 357.5 241 79.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.6e-94 350.1 246 74.8
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.0e-93 347.4 297 64.0
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.3e-93 346.3 248 73.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.5e-92 343.6 240 75.0
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.7e-91 340.1 302 63.2
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 7.0e-90 334.7 286 61.9
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 2.2e-88 329.7 283 65.4
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.5e-87 326.2 296 61.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 7.2e-87 324.7 302 60.9
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.6e-86 322.4 221 78.3
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.6e-84 316.2 283 62.5
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 1.3e-80 303.9 218 74.3
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.3e-80 303.1 215 75.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-79 300.8 179 83.8
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.6e-78 295.8 179 81.0
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 4.7e-78 295.4 231 71.4
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.0e-77 292.7 240 67.1
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.9e-75 285.4 238 63.0
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.7e-73 279.6 298 51.7
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 1.3e-72 277.3 219 63.5
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-71 274.2 249 62.7
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.0e-70 268.1 271 56.8
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.3e-69 266.5 281 54.1
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.0e-68 263.5 299 50.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.8e-68 261.2 228 59.2
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.3e-67 260.8 179 70.9
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.9e-67 259.6 241 58.9
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 4.7e-62 242.3 175 66.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-61 240.4 163 72.4
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 4.4e-60 235.7 139 83.5
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.8e-60 234.6 196 65.8
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.9e-50 203.8 254 52.8
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.1e-47 194.5 213 47.4
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-44 184.5 172 63.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-43 181.0 158 63.9
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.4e-42 177.6 148 63.5
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.6e-40 168.7 118 72.9
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.4e-34 150.2 112 71.4
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.1e-30 135.2 82 81.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 4.6e-25 119.4 67 86.6
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 4.6e-25 119.4 64 89.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.8e-19 99.8 66 77.3
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.4e-13 80.5 107 47.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 2.2e-11 73.9 90 51.1
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.2e-10 70.1 95 48.4
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 3.0e-08 63.5 55 63.6
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.0e-08 63.5 35 85.7


User provided reference genes

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