Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 5.9e-155 550.8 278 100.0
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 3.9e-130 468.4 260 92.3
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 3.4e-94 349.0 213 82.2
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 2.1e-88 329.7 286 64.3
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 5.3e-87 325.1 266 64.7
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 1.6e-83 313.5 265 61.9
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 1.6e-83 313.5 265 62.3
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.0e-82 310.8 247 65.2
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 6.7e-82 308.1 202 73.3
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 1.5e-81 307.0 213 69.5
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 9.6e-81 304.3 195 75.4
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 1.6e-80 303.5 215 69.3
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 1.1e-79 300.8 215 68.8
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 1.1e-79 300.8 269 58.7
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 3.1e-79 299.3 266 60.2
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 4.0e-79 298.9 225 66.7
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 9.0e-79 297.7 213 65.7
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 3.4e-78 295.8 223 68.2
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 4.5e-78 295.4 227 64.3
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.0e-77 294.3 219 65.3
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.3e-77 293.9 240 63.3
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 2.9e-77 292.7 266 58.6
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 3.8e-77 292.4 196 71.4
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 4.9e-77 292.0 215 66.5
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.2e-76 289.3 244 61.5
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 3.2e-76 289.3 259 60.2
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 4.2e-76 288.9 254 59.4
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.2e-76 288.9 245 61.6
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 7.1e-76 288.1 244 61.9
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.5e-75 285.8 244 61.5
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 3.5e-75 285.8 204 66.2
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 4.6e-75 285.4 264 58.3
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 4.6e-75 285.4 252 59.5
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 6.0e-75 285.0 249 59.8
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 7.9e-75 284.6 241 60.6
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 1.0e-74 284.3 193 73.1
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 1.3e-74 283.9 207 66.7
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 2.3e-74 283.1 216 65.7
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 5.1e-74 282.0 238 58.8
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 5.1e-74 282.0 205 66.8
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 6.7e-74 281.6 240 61.2
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 6.7e-74 281.6 205 66.3
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 6.7e-74 281.6 213 66.7
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 8.7e-74 281.2 205 68.8
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 8.7e-74 281.2 217 65.4
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.1e-73 280.8 243 61.3
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 1.5e-73 280.4 239 63.6
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 1.9e-73 280.0 200 70.0
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 3.3e-73 279.3 227 63.9
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 3.3e-73 279.3 219 64.4
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 4.3e-73 278.9 220 63.6
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 4.3e-73 278.9 220 63.6
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 7.4e-73 278.1 221 63.8
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 1.3e-72 277.3 218 63.8
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 1.3e-72 277.3 200 65.5
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 2.2e-72 276.6 245 58.8
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 2.8e-72 276.2 251 57.0
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 3.7e-72 275.8 213 65.3
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 6.3e-72 275.0 218 63.3
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 8.2e-72 274.6 219 64.4
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 8.2e-72 274.6 219 64.4
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 8.2e-72 274.6 254 59.1
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.1e-71 274.2 220 62.7
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 2.4e-71 273.1 221 63.3
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 2.4e-71 273.1 221 62.0
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 4.1e-71 272.3 218 62.8
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 4.1e-71 272.3 214 61.7
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 5.3e-71 271.9 248 54.8
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 1.2e-70 270.8 225 60.0
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 1.5e-70 270.4 222 62.6
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 1.5e-70 270.4 214 61.2
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 1.3e-69 267.3 222 62.2
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 9.4e-68 261.2 219 60.3
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 6.1e-67 258.5 224 59.8
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 3.0e-66 256.1 222 59.9
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 3.0e-66 256.1 222 59.9
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 3.0e-66 256.1 215 60.9
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 8.8e-66 254.6 207 62.8
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 3.3e-65 252.7 207 62.3
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 3.3e-65 252.7 207 62.3
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 1.4e-63 247.3 227 58.6
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 4.1e-63 245.7 202 59.4
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 1.1e-60 237.7 225 54.2
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 1.4e-60 237.3 198 58.1
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 3.6e-59 232.6 217 55.8
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 4.7e-59 232.3 161 67.7
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 3.3e-57 226.1 240 50.4
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 3.7e-56 222.6 165 65.5
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 6.3e-56 221.9 264 50.8
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 1.4e-55 220.7 185 61.6
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 2.4e-55 219.9 197 51.3
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 2.8e-48 196.4 137 68.6
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 9.1e-47 191.4 177 59.9
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 6.5e-45 185.3 156 62.2
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 1.5e-44 184.1 180 53.9
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 2.7e-43 179.9 133 62.4
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 1.5e-41 174.1 187 47.1
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 4.8e-40 169.1 155 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 4.7e-35 152.5 196 38.3
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 3.0e-34 149.8 189 41.3
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.6e-33 146.7 106 65.1
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 3.7e-32 142.9 131 57.3
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 5.9e-30 135.6 103 60.2
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 8.6e-29 131.7 130 53.1
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 2.5e-28 130.2 109 61.5
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.4e-23 114.4 194 33.5
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 3.2e-23 113.2 224 33.0
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 2.0e-22 110.5 111 55.9
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.0e-22 110.5 197 29.9
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 3.2e-15 86.7 115 39.1
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.5e-14 83.2 180 31.1
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 7.3e-12 75.5 201 26.9
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 1.8e-10 70.9 68 58.8
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 5.2e-10 69.3 54 68.5
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 9.8e-09 65.1 48 64.6
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.9e-07 60.8 226 23.9
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.4e-07 60.5 214 26.2
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 4.1e-07 59.7 214 24.8
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 1.6e-06 57.8 218 24.3
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 3.5e-06 56.6 186 23.7
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 3.5e-06 56.6 214 25.7
CANSAT46G0002 Cannabis sativa HOM05D003252 ORTHO05D003640 4.6e-06 56.2 157 26.8
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 6.0e-06 55.8 198 24.2


User provided reference genes

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