Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 8.5e-238 826.6 424 100.0
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 5.2e-227 790.8 424 95.5
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 1.1e-195 686.8 428 81.8
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 2.4e-187 659.1 430 77.0
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 4.0e-187 658.3 416 79.1
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.2e-183 646.7 424 75.7
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 6.0e-183 644.4 424 77.1
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 1.3e-182 643.3 429 75.5
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 1.3e-182 643.3 428 75.9
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 5.1e-182 641.3 436 74.5
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 2.5e-181 639.0 438 74.9
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.2e-180 636.7 424 74.1
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 2.8e-180 635.6 429 74.4
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 3.6e-180 635.2 406 77.8
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 3.6e-180 635.2 429 73.9
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 4.7e-180 634.8 409 78.0
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.6e-178 629.0 440 73.0
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 1.3e-177 626.7 419 74.0
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 1.3e-177 626.7 436 73.6
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 1.3e-177 626.7 432 73.1
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.2e-177 625.9 433 72.1
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 2.2e-177 625.9 444 72.3
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 2.9e-177 625.5 424 73.8
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.4e-176 623.2 419 73.5
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 1.4e-176 623.2 433 72.5
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 3.2e-176 622.1 427 74.2
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 7.1e-176 620.9 428 73.8
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 1.6e-175 619.8 437 72.8
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 3.5e-175 618.6 431 71.5
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.0e-174 617.1 416 73.3
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.7e-174 616.3 425 72.2
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.7e-174 616.3 438 71.5
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 3.0e-174 615.5 413 72.9
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 5.1e-174 614.8 424 72.6
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 5.1e-174 614.8 424 72.4
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.1e-173 613.6 425 73.6
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 4.3e-173 611.7 437 72.1
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 5.6e-173 611.3 436 72.2
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 9.6e-173 610.5 414 72.5
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 4.8e-172 608.2 424 73.1
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 4.8e-172 608.2 429 70.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 1.8e-171 606.3 439 71.5
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 1.8e-171 606.3 429 70.4
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 3.1e-171 605.5 419 73.3
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 3.1e-171 605.5 434 69.6
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 5.3e-171 604.7 420 73.6
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.5e-170 603.2 427 71.7
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.5e-170 603.2 439 71.1
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 2.0e-170 602.8 412 72.6
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 4.5e-170 601.7 429 72.3
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 7.6e-170 600.9 421 72.9
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 1.3e-169 600.1 411 74.0
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 2.2e-169 599.4 435 69.2
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.2e-169 599.4 403 73.9
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 3.8e-169 598.6 435 69.0
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 6.4e-169 597.8 436 68.6
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 1.1e-168 597.0 425 71.3
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 3.2e-168 595.5 427 72.6
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 4.2e-168 595.1 428 71.5
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 4.2e-168 595.1 411 71.8
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 9.3e-168 594.0 406 72.7
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 3.5e-167 592.0 428 69.2
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 3.5e-167 592.0 416 72.1
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 7.9e-167 590.9 453 66.4
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 2.3e-166 589.3 434 69.6
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 3.0e-166 589.0 388 76.3
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 3.9e-166 588.6 409 73.6
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.5e-165 585.9 411 73.0
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 7.4e-165 584.3 444 69.8
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.1e-164 582.8 411 72.7
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.1e-163 580.5 407 72.5
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.8e-163 579.7 432 69.4
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 3.1e-163 578.9 393 71.5
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 3.1e-163 578.9 427 68.1
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.8e-161 572.0 424 69.3
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.1e-160 570.5 492 61.6
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 2.7e-159 565.8 432 69.4
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 3.5e-159 565.5 388 71.1
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 6.0e-159 564.7 422 69.9
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 8.7e-158 560.8 422 67.3
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 2.8e-156 555.8 405 69.6
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.4e-155 553.5 522 58.2
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.4e-155 553.5 398 67.8
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.4e-154 548.9 366 76.2
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 3.4e-154 548.9 433 66.5
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 3.4e-154 548.9 433 66.5
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 2.2e-153 546.2 390 69.7
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 7.9e-151 537.7 379 68.6
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 3.9e-150 535.4 380 71.8
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 7.4e-149 531.2 363 75.5
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 1.2e-143 513.8 405 63.7
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 5.1e-142 508.4 394 64.5
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.9e-137 492.7 370 71.6
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 1.3e-132 477.2 323 73.1
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 2.8e-132 476.1 399 60.4
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 8.5e-129 464.5 419 58.9
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 2.0e-125 453.4 328 71.0
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 1.3e-124 450.7 391 57.8
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 2.5e-120 436.4 322 72.0
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 2.7e-119 433.0 401 59.1
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 4.0e-110 402.5 297 65.3
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 2.6e-109 399.8 322 68.6
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.3e-108 397.5 394 55.8
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.2e-95 354.4 253 73.9
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.1e-95 353.6 338 60.1
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 2.7e-90 336.7 380 48.4
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 8.9e-86 321.6 227 73.1
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 2.6e-85 320.1 218 76.1
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 3.3e-80 303.1 219 67.1
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 4.1e-75 286.2 376 45.2
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.1e-64 251.5 383 40.5
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.6e-53 212.2 144 72.9
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.0e-49 200.3 120 79.2
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 2.0e-45 187.6 112 79.5
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.4e-45 186.8 128 71.9
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 4.9e-44 183.0 128 71.1
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 7.1e-43 179.1 128 69.5
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.3e-36 158.3 104 78.8
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 7.1e-35 152.5 126 61.9
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 7.4e-32 142.5 89 76.4
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 2.2e-31 141.0 89 75.3
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 4.3e-24 116.7 70 77.1
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 7.4e-24 115.9 84 66.7
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.3e-23 115.2 82 63.4
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 5.3e-22 109.8 69 76.8
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 5.0e-20 103.2 66 66.7
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 1.4e-19 101.7 124 50.8
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 4.2e-19 100.1 242 38.4
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 2.7e-18 97.4 49 83.7
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.0e-17 95.5 126 49.2
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 5.3e-14 83.2 51 74.5
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 3.8e-12 77.0 43 76.7
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 1.0e-09 68.9 41 75.6


User provided reference genes

Program Settings