Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 5.4e-136 487.6 243 100.0
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 4.7e-116 421.4 243 86.0
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 1.5e-66 256.9 242 59.1
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 6.5e-57 224.9 250 54.4
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 6.5e-57 224.9 243 55.1
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 2.6e-53 213.0 247 51.8
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 2.2e-52 209.9 221 53.4
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 4.8e-52 208.8 246 52.4
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 2.0e-50 203.4 242 50.8
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 3.5e-50 202.6 247 51.4
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 5.9e-50 201.8 248 50.4
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 1.0e-49 201.1 252 50.8
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 1.3e-49 200.7 248 51.6
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 3.8e-49 199.1 247 49.4
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 5.0e-49 198.7 253 50.2
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 6.5e-49 198.4 250 48.4
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 3.2e-48 196.1 250 48.0
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 4.2e-48 195.7 285 46.3
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 2.1e-47 193.4 254 47.6
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.1e-47 193.4 249 47.4
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 3.6e-47 192.6 225 52.9
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 3.9e-46 189.1 256 46.9
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 5.2e-46 188.7 251 46.6
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 6.7e-46 188.3 254 46.1
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 3.3e-45 186.0 254 47.2
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 5.7e-45 185.3 243 44.9
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 9.7e-45 184.5 240 45.8
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 4.8e-44 182.2 254 41.3
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 8.2e-44 181.4 265 43.0
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 2.4e-43 179.9 251 42.6
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 7.0e-43 178.3 154 57.8
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 7.0e-43 178.3 241 46.9
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 1.2e-42 177.6 251 47.0
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 1.2e-42 177.6 246 48.0
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 4.5e-42 175.6 243 45.7
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 4.5e-42 175.6 180 49.4
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 7.7e-42 174.9 166 54.8
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 1.0e-41 174.5 180 52.2
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.3e-41 174.1 226 48.2
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.3e-41 174.1 226 48.2
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 1.3e-41 174.1 240 44.2
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 5.0e-41 172.2 237 46.0
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 6.5e-41 171.8 212 49.5
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 8.5e-41 171.4 255 43.5
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 2.5e-40 169.9 220 46.8
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 5.5e-40 168.7 212 49.1
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 5.5e-40 168.7 247 40.9
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 1.6e-39 167.2 247 42.9
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 2.7e-39 166.4 257 46.7
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 6.1e-39 165.2 266 44.7
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 8.0e-39 164.9 252 42.5
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 8.0e-39 164.9 212 45.8
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 1.0e-38 164.5 255 45.5
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 1.0e-38 164.5 242 41.7
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 1.4e-38 164.1 251 42.2
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 1.4e-38 164.1 254 42.9
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 1.8e-38 163.7 249 45.4
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 1.8e-38 163.7 246 41.9
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 1.8e-38 163.7 246 43.1
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 2.3e-38 163.3 250 43.2
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 3.0e-38 162.9 240 44.2
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 3.0e-38 162.9 273 43.6
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 6.8e-38 161.8 249 45.4
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 1.5e-37 160.6 244 45.1
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 5.7e-37 158.7 150 58.0
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 3.1e-35 152.9 245 42.9
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 4.1e-35 152.5 251 42.2
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 5.3e-35 152.1 180 48.9
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 2.7e-34 149.8 237 41.4
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 2.2e-33 146.7 245 42.4
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 3.8e-33 146.0 154 49.4
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 1.1e-32 144.4 164 49.4
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 3.0e-30 136.3 202 43.1
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 3.0e-30 136.3 207 43.0
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 4.0e-30 136.0 172 44.8
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 1.1e-27 127.9 116 58.6
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 1.4e-27 127.5 221 40.3
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.2e-26 124.4 126 54.0
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 2.3e-25 120.2 215 42.8
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 1.1e-24 117.9 190 44.2
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 9.5e-24 114.8 180 41.1
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 4.4e-21 105.9 243 33.7
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 3.5e-18 96.3 132 43.9
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 1.7e-17 94.0 77 62.3
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 1.1e-11 74.7 103 43.7
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 4.1e-11 72.8 222 31.1
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.7e-09 67.4 135 37.8
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 9.5e-08 61.6 66 51.5
ATR0693G104 Amborella trichopoda HOM05D007766 ORTHO05D009733 1.2e-07 61.2 154 33.8
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 6.2e-07 58.9 102 38.2


User provided reference genes

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