Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 2169.0 1095 100.0
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 2082.8 1095 94.8
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1768.1 1096 80.6
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1728.8 1099 78.9
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1716.8 1095 78.2
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1707.2 1121 76.5
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1702.6 1078 78.0
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1681.8 1094 76.2
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1677.5 1093 76.3
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1670.6 1091 76.0
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1660.6 1101 75.7
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1660.6 1092 75.7
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1647.1 1098 74.4
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1641.7 1091 75.3
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1639.4 1092 74.9
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1637.5 1096 74.5
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1637.5 1099 74.3
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1635.2 1097 74.4
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1631.3 1105 73.7
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1631.3 1078 76.0
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1622.8 1118 72.9
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1621.7 1081 74.0
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1620.9 1083 74.3
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1620.1 1092 73.9
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1619.0 1091 74.3
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1618.2 1092 73.7
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1604.0 1091 73.4
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1599.7 1080 74.2
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1598.2 1083 74.3
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1598.2 1086 73.8
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1597.4 1086 73.8
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1595.1 1089 73.5
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1593.2 1094 72.9
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1592.4 1083 73.6
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1592.0 1089 73.2
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1592.0 1083 73.4
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1588.2 1096 72.2
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1586.6 1083 72.3
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1585.9 1080 73.4
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1585.1 1085 72.6
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1582.0 1080 73.1
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1581.2 1085 73.0
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1581.2 1084 73.6
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1580.5 1092 73.1
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1580.1 1082 73.7
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1578.5 1093 72.3
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1577.8 1081 73.5
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1574.7 1125 71.0
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1574.7 1084 72.8
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1573.5 1085 72.8
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1568.9 1086 72.7
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1565.8 1083 72.4
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1565.4 1087 71.8
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1564.3 1094 70.5
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1562.7 1083 72.4
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1562.4 1085 72.0
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1558.1 1087 71.0
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1552.7 1086 71.2
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1552.0 1086 71.5
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1548.9 1084 70.8
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1091 71.5
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1545.8 1091 71.3
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1543.9 1091 71.2
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1540.8 1097 69.4
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1539.6 1095 71.2
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1537.3 1091 71.3
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1536.2 1075 71.3
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1535.4 1087 70.1
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1525.0 1083 71.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1522.3 1090 69.9
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1521.5 1096 70.2
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1520.0 1089 70.9
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1516.9 1093 69.7
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1513.8 992 76.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1511.5 1074 71.0
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1507.7 1097 68.6
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1081 69.7
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1491.5 1221 64.4
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1489.6 1092 70.0
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1486.9 1079 69.3
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1483.8 1081 68.7
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1471.1 1091 68.9
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1434.5 1084 66.8
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1412.1 949 73.3
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1398.3 1140 63.8
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1397.5 1090 65.4
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1392.1 1077 65.8
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1377.5 1201 59.5
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1376.7 1096 64.1
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1353.2 949 71.2
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1333.2 1096 62.1
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1231.5 759 80.2
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1223.0 1076 59.2
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1212.6 758 78.8
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1207.2 980 64.5
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1184.1 1092 59.2
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1113.6 754 72.1
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1087.0 719 74.3
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 1.3e-285 986.9 1086 49.4
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.3e-277 960.3 1024 54.0
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 5.9e-267 924.9 1092 47.8
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.5e-249 867.1 748 59.2
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 3.6e-248 862.4 628 69.3
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 5.4e-236 822.0 539 75.9
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 5.1e-226 788.9 1026 44.5
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 9.0e-207 724.9 656 59.3
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.1e-204 718.0 513 69.4
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 5.7e-185 652.5 1530 31.2
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 4.8e-168 596.3 403 75.2
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 5.6e-132 476.5 357 70.3
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 6.9e-82 310.1 200 73.5
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 2.0e-60 238.8 163 66.9
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.0e-41 175.6 112 79.5
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 4.3e-23 114.8 59 83.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 2.9e-19 102.1 54 81.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 1.7e-16 92.8 65 64.6
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.4e-13 83.2 148 38.5
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 3.4e-12 78.6 530 20.9
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 3.2e-10 72.0 79 50.6
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 7.1e-10 70.9 43 72.1
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 7.1e-10 70.9 43 72.1
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 7.1e-10 70.9 79 49.4
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 3.5e-09 68.6 42 71.4


User provided reference genes

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