Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 3.6e-283 977.6 515 100.0
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 6.8e-189 664.5 522 74.1
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 6.6e-168 594.7 531 66.5
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 4.3e-167 592.0 535 65.8
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 7.4e-103 378.6 546 47.4
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 1.1e-101 374.8 533 47.8
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 6.5e-99 365.5 532 48.5
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 2.5e-98 363.6 542 46.9
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 9.4e-98 361.7 551 47.4
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 4.4e-95 352.8 537 46.7
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 1.3e-94 351.3 529 47.3
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 2.2e-94 350.5 535 48.2
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 1.2e-92 344.7 540 46.7
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 5.9e-92 342.4 507 46.5
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 7.7e-92 342.0 530 44.5
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 1.9e-90 337.4 543 45.1
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 2.1e-89 334.0 525 47.4
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 3.6e-89 333.2 535 45.4
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 4.7e-89 332.8 516 47.1
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.4e-88 331.3 525 47.2
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 1.4e-88 331.3 518 46.5
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.8e-88 330.9 526 47.3
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 2.3e-88 330.5 551 45.6
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 5.2e-88 329.3 537 46.4
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 8.8e-88 328.6 541 44.9
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 2.0e-87 327.4 541 43.8
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 7.5e-87 325.5 526 44.9
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 2.8e-86 323.6 521 45.5
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 2.4e-85 320.5 543 45.9
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 4.1e-85 319.7 514 44.2
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 7.0e-85 318.9 542 44.5
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 2.0e-84 317.4 519 45.7
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 5.9e-84 315.8 525 42.7
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.7e-83 314.3 513 45.0
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 2.9e-83 313.5 525 42.5
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 3.8e-83 313.2 536 44.8
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 3.8e-83 313.2 540 43.3
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 1.5e-82 311.2 516 45.5
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 3.3e-82 310.1 524 42.7
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 7.2e-82 308.9 520 44.8
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 3.6e-81 306.6 521 44.3
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 8.0e-81 305.4 543 43.6
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 1.0e-80 305.1 541 43.1
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 1.8e-80 304.3 530 43.8
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 8.9e-80 302.0 513 44.2
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 2.6e-79 300.4 556 42.3
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 4.4e-79 299.7 516 44.8
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 9.8e-79 298.5 534 43.6
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 9.8e-79 298.5 523 43.6
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 1.3e-78 298.1 535 40.6
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 3.7e-78 296.6 560 42.0
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 1.1e-77 295.0 551 42.5
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.8e-77 294.3 510 42.4
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 2.4e-77 293.9 538 41.8
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 3.2e-77 293.5 547 43.1
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 4.1e-77 293.1 521 41.5
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 7.0e-77 292.4 543 43.8
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 7.0e-77 292.4 550 43.3
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.2e-76 291.6 518 42.5
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.2e-76 291.6 525 41.3
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 1.6e-76 291.2 534 43.1
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 4.5e-76 289.7 525 41.0
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 5.9e-76 289.3 542 42.1
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 2.3e-75 287.3 562 41.6
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 5.0e-75 286.2 522 42.0
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 5.0e-75 286.2 538 43.5
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 5.0e-75 286.2 534 41.4
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 8.6e-75 285.4 540 44.1
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 1.1e-74 285.0 543 42.2
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 1.5e-74 284.6 558 41.0
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 1.5e-74 284.6 544 42.1
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 1.5e-74 284.6 541 41.8
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 3.3e-74 283.5 530 42.8
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 3.3e-74 283.5 539 42.3
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 4.3e-74 283.1 530 41.7
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 7.3e-74 282.3 519 40.1
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 1.2e-73 281.6 509 42.0
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 4.7e-73 279.6 480 45.8
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.4e-72 278.1 524 42.6
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 1.8e-72 277.7 527 40.6
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 2.3e-72 277.3 517 39.8
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 4.0e-72 276.6 528 42.0
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 5.2e-72 276.2 528 40.9
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 1.2e-71 275.0 547 42.4
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 3.4e-71 273.5 518 40.3
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 9.8e-71 271.9 525 39.6
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 9.8e-71 271.9 536 41.6
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 3.7e-70 270.0 549 40.4
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 4.9e-70 269.6 517 39.7
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 1.9e-69 267.7 547 42.2
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 1.9e-69 267.7 518 41.7
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 1.2e-68 265.0 567 39.7
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 1.6e-68 264.6 559 41.0
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 2.0e-68 264.2 539 39.5
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 6.0e-68 262.7 529 39.7
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 1.3e-67 261.5 369 50.4
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 1.7e-67 261.2 576 39.4
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 2.5e-66 257.3 538 38.7
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 5.6e-66 256.1 526 41.3
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 1.2e-65 255.0 525 40.4
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 2.1e-65 254.2 517 39.7
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 3.6e-65 253.4 451 43.2
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 1.1e-64 251.9 523 38.8
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 1.4e-64 251.5 462 41.1
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 1.4e-64 251.5 519 39.1
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.5e-63 248.1 518 38.0
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 3.7e-62 243.4 520 37.9
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 2.4e-61 240.7 509 39.1
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 3.2e-61 240.4 524 38.4
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.2e-60 238.4 516 39.3
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 2.1e-60 237.7 514 40.7
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 2.1e-57 227.6 572 37.4
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 8.1e-57 225.7 518 35.5
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 1.8e-56 224.6 521 36.7
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 4.9e-54 216.5 238 55.0
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 2.1e-52 211.1 216 54.6
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 8.6e-51 205.7 439 41.7
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 5.2e-48 196.4 348 42.8
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 6.8e-48 196.1 350 42.9
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 8.9e-48 195.7 530 34.3
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 1.2e-47 195.3 515 36.5
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 1.3e-46 191.8 410 37.8
AUR62023468 Chenopodium quinoa HOM05D004310 ORTHO05D005403 6.0e-44 183.0 416 38.7
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 4.3e-42 176.8 148 62.2
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 5.3e-40 169.9 509 33.0
Gohir.A12G111933 Gossypium hirsutum HOM05D004310 ORTHO05D005403 7.9e-36 156.0 371 39.6
GSVIVG01027093001 Vitis vinifera HOM05D004310 ORTHO05D005403 1.9e-34 151.4 341 39.6
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 3.3e-34 150.6 206 48.5
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 2.1e-33 147.9 214 47.7
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 4.5e-31 140.2 504 29.8
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 4.9e-30 136.7 153 55.6
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 9.3e-29 132.5 274 35.8
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 3.3e-26 124.0 547 28.9
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 4.0e-24 117.1 114 59.6
HPP92_024432 Vanilla planifolia HOM05D004310 ORTHO05D005403 1.2e-23 115.5 169 47.3
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 1.0e-19 102.4 141 43.3
Lsat_1_v5_gn_8_60321 Lactuca sativa HOM05D004310 ORTHO05D005403 1.0e-19 102.4 60 83.3
FAN06G2445 Fragaria x ananassa HOM05D004310 ORTHO05D005403 9.6e-18 95.9 185 37.3
arahy.Tifrunner.gnm1.ann1.LY1RHD Arachis hypogaea HOM05D004310 ORTHO05D005403 2.8e-17 94.4 115 53.0
ATR1116G001 Amborella trichopoda HOM05D004310 ORTHO05D005403 1.8e-16 91.7 107 57.9
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 2.4e-16 91.3 256 32.4
CARHR249350 Cardamine hirsuta HOM05D004310 ORTHO05D005403 5.0e-14 83.6 50 88.0
C09p73290 Brassica napus HOM05D004310 ORTHO05D040128 1.4e-13 82.0 82 58.5
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 1.9e-13 81.6 82 58.5
BolC9t60029H Brassica oleracea HOM05D004310 ORTHO05D040128 1.9e-13 81.6 82 58.5
BcaC04g24118 Brassica carinata HOM05D004310 ORTHO05D005403 3.5e-12 77.4 323 31.0
ATR0602G109 Amborella trichopoda HOM05D004310 ORTHO05D005403 4.6e-12 77.0 48 79.2
AL2G16720 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 6.7e-11 73.2 52 75.0
SEGI_04150 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 5.7e-10 70.1 50 72.0
SEGI_12000 Sequoiadendron giganteum HOM05D004310 ORTHO05D005403 5.7e-10 70.1 50 72.0
BraA10t45076Z Brassica rapa HOM05D001260 ORTHO05D002424 2.8e-09 67.8 49 71.4
PSO724G1042 Papaver somniferum HOM05D004310 ORTHO05D005403 2.8e-09 67.8 49 69.4
BcaC03g13029 Brassica carinata HOM05D004310 ORTHO05D009268 8.2e-09 66.2 45 75.6
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 8.2e-09 66.2 45 75.6
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 8.2e-09 66.2 45 75.6
MBI13_g41012_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.8e-08 65.1 295 29.2
Aa31sc12G190 Aethionema arabicum HOM05D004310 ORTHO05D005403 4.1e-08 63.9 100 44.0
EL10Ac7g16893 Beta vulgaris HOM05D000218 ORTHO05D000125 5.3e-08 63.5 121 41.3
arahy.Tifrunner.gnm1.ann1.5IVJ41 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.2e-07 62.4 84 50.0
ECA236G4521 Erigeron canadensis HOM05D000218 ORTHO05D000125 2.6e-07 61.2 122 40.2
RcHm_v2.0_Chr1g0344721 Rosa chinensis HOM05D004310 ORTHO05D005403 4.5e-07 60.5 47 70.2
Os09g0452700 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 7.7e-07 59.7 121 39.7
arahy.Tifrunner.gnm1.ann1.FLDD49 Arachis hypogaea HOM05D004310 ORTHO05D005403 1.3e-06 58.9 67 53.7
AUR62004467 Chenopodium quinoa HOM05D000319 ORTHO05D000125 2.9e-06 57.8 97 42.3
AUR62002907 Chenopodium quinoa HOM05D000218 ORTHO05D000125 3.8e-06 57.4 122 38.5
PSO541G2994 Papaver somniferum HOM05D000218 ORTHO05D000125 3.8e-06 57.4 104 39.4
PSO541G4686 Papaver somniferum HOM05D000218 ORTHO05D000125 3.8e-06 57.4 104 39.4
PSO573G0013 Papaver somniferum HOM05D000218 ORTHO05D000125 3.8e-06 57.4 104 39.4
Potri.004G194000 Populus trichocarpa HOM05D000218 ORTHO05D000125 3.8e-06 57.4 79 46.8
AT3G09790 Arabidopsis thaliana HOM05D000218 ORTHO05D000125 5.0e-06 57.0 132 36.4
Rhsim12G0048900 Rhododendron simsii HOM05D000218 ORTHO05D000125 5.0e-06 57.0 87 44.8
HanXRQChr11g0340221 Helianthus annuus HOM05D000218 ORTHO05D000125 8.5e-06 56.2 87 43.7
Os06g0681400 Oryza sativa ssp. japonica HOM05D000218 ORTHO05D000125 8.5e-06 56.2 110 37.3


User provided reference genes

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