Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 0.0e+00 1090.5 567 100.0
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.6e-260 901.4 545 88.1
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.9e-168 596.7 565 60.5
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 6.2e-151 538.5 574 54.4
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 6.6e-145 518.5 568 51.4
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 4.3e-144 515.8 565 52.6
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 2.1e-143 513.5 565 52.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.5e-141 507.3 580 52.1
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.3e-135 487.6 537 54.0
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.3e-132 477.6 560 50.0
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 2.2e-132 476.9 670 45.2
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 3.8e-132 476.1 566 49.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.8e-132 476.1 565 50.3
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 2.1e-130 470.3 550 50.5
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.1e-129 465.7 564 47.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-128 464.2 562 49.1
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.4e-126 457.6 558 50.4
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 3.1e-126 456.4 574 48.8
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.0e-126 456.1 565 48.1
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 6.9e-126 455.3 562 49.3
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 9.0e-126 454.9 550 50.7
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 2.6e-125 453.4 565 48.8
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 5.8e-125 452.2 569 49.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.7e-124 450.7 552 48.2
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.8e-124 449.5 557 49.6
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 6.5e-124 448.7 559 47.8
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 6.5e-124 448.7 563 49.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.1e-123 448.0 560 48.8
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.4e-123 447.6 557 49.4
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 4.2e-123 446.0 555 47.7
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.3e-121 440.3 566 48.2
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 5.1e-121 439.1 552 48.2
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 8.7e-121 438.3 559 49.2
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.9e-120 437.2 572 47.0
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 2.1e-119 433.7 566 46.1
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 3.7e-119 433.0 588 47.1
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 6.2e-119 432.2 551 48.8
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 2.6e-117 426.8 551 47.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 5.8e-117 425.6 569 45.2
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.0e-116 424.9 550 46.4
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.9e-116 423.3 561 48.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 5.0e-116 422.5 567 47.4
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 7.2e-115 418.7 560 47.1
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.6e-114 417.5 558 45.2
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 3.0e-113 413.3 564 45.7
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.7e-113 411.8 565 45.1
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.1e-112 411.4 571 44.7
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.5e-112 411.0 551 45.7
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.6e-111 407.5 573 44.2
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.6e-111 407.5 538 45.4
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.6e-111 407.5 586 44.4
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.2e-111 407.1 617 43.3
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 2.8e-111 406.8 568 46.3
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.7e-111 406.4 567 45.7
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.5e-109 401.0 568 44.7
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 5.9e-109 399.1 568 46.3
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.0e-108 398.3 571 44.7
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.9e-108 396.7 566 44.2
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.2e-107 392.9 572 45.6
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.9e-106 388.7 576 42.9
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.3e-105 387.1 523 46.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.0e-105 386.7 579 43.0
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-105 386.7 579 43.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.5e-104 384.4 527 45.5
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.3e-104 382.9 579 42.7
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 6.3e-103 379.0 504 45.8
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.3e-103 379.0 507 45.2
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 6.9e-102 375.6 505 45.7
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.2e-101 374.8 556 44.6
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.5e-101 372.9 573 41.4
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 3.8e-100 369.8 547 41.5
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.1e-99 368.2 538 42.8
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.9e-97 359.8 487 45.6
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.0e-93 347.4 594 38.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 4.5e-93 346.3 553 42.3
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.0e-92 345.1 556 42.4
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 9.4e-91 338.6 527 40.8
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.4e-89 334.7 553 39.4
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-89 334.0 576 39.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.3e-89 334.0 537 41.0
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 4.0e-89 333.2 526 41.3
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.0e-89 333.2 527 42.9
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 6.7e-89 332.4 330 54.8
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 3.7e-87 326.6 555 41.6
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 4.8e-87 326.2 541 39.4
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 6.3e-87 325.9 576 40.8
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.4e-86 324.7 531 40.7
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 3.1e-86 323.6 533 41.7
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 9.1e-86 322.0 556 41.5
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 9.1e-86 322.0 554 41.3
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.2e-85 321.6 557 41.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.7e-85 320.5 553 41.6
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 4.5e-85 319.7 531 42.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 7.7e-85 318.9 553 40.7
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.5e-83 314.7 312 57.4
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 4.2e-83 313.2 542 40.4
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 9.4e-83 312.0 511 40.3
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 4.7e-82 309.7 531 41.2
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 4.7e-82 309.7 531 41.2
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 4.7e-82 309.7 531 41.2
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 1.4e-81 308.1 462 45.5
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.0e-80 304.3 571 38.0
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.0e-80 304.3 479 46.3
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 9.8e-80 302.0 478 42.1
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.1e-78 298.5 535 38.5
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 7.7e-77 292.4 502 38.0
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 4.7e-74 283.1 578 37.7
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 8.0e-74 282.3 561 36.5
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.4e-73 281.6 534 36.1
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.9e-69 266.2 415 44.1
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.7e-68 264.6 555 37.8
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 2.3e-68 264.2 558 36.4
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.6e-66 256.9 468 38.0
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 5.2e-65 253.1 227 58.1
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.9e-63 246.5 504 36.9
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.9e-59 234.6 558 33.2
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 7.3e-59 232.6 463 37.8
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.8e-57 228.0 269 49.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.2e-57 226.5 269 48.7
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-56 225.3 269 48.7
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 2.9e-55 220.7 588 32.1
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 3.9e-52 210.3 282 44.7
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-51 208.4 397 38.5
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.3e-51 206.1 553 31.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 4.7e-50 203.4 328 38.4
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.7e-50 203.4 297 40.1
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.9e-46 191.4 471 34.4
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 5.2e-41 173.3 419 33.4
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 5.4e-38 163.3 322 37.3
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 2.7e-37 161.0 165 52.7
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-37 160.6 526 28.9
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.3e-36 157.9 123 56.9
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.1e-35 155.6 371 34.2
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 1.8e-33 148.3 105 66.7
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 5.8e-32 143.3 334 34.4
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 5.8e-32 143.3 390 32.3
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 3.2e-30 137.5 118 54.2
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 2.1e-29 134.8 427 28.1
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 4.6e-29 133.7 129 49.6
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 6.9e-25 119.8 136 51.5
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.4e-23 113.2 97 55.7
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.0e-20 104.4 102 49.0
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.6e-18 98.6 288 26.7
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 4.0e-17 94.0 167 35.3
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 3.4e-16 90.9 104 50.0
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.5e-16 90.5 130 42.3
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.6e-13 80.5 123 42.3
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.9e-06 58.5 62 51.6
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 5.5e-06 57.0 72 47.2
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 7.1e-06 56.6 72 47.2
C03p85080 Brassica napus HOM05D004224 ORTHO05D016135 7.1e-06 56.6 79 44.3
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 7.1e-06 56.6 61 54.1


User provided reference genes

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