Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.8e-265 918.7 459 100.0
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 4.9e-231 804.3 415 97.6
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.2e-224 783.1 415 94.7
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.9e-222 775.8 415 93.0
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 4.6e-221 771.2 415 92.5
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 6.0e-221 770.8 415 92.5
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 6.0e-221 770.8 423 91.7
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.7e-220 769.2 415 92.3
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.5e-219 766.1 415 92.0
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 6.2e-218 760.8 414 91.5
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 1.4e-217 759.6 414 90.3
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 1.8e-217 759.2 439 88.6
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 5.3e-217 757.7 412 91.3
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 6.9e-217 757.3 415 89.9
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 4.5e-216 754.6 415 89.9
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 7.6e-216 753.8 415 89.4
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 9.9e-216 753.4 415 89.4
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 4.9e-215 751.1 415 89.4
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 2.4e-214 748.8 415 89.4
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 4.2e-214 748.0 415 88.2
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 4.2e-214 748.0 415 89.2
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 2.1e-213 745.7 415 88.7
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 2.7e-213 745.3 415 88.4
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.7e-213 745.3 415 88.7
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 4.6e-213 744.6 461 84.2
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 3.9e-212 741.5 423 87.2
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 5.1e-212 741.1 415 88.4
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.6e-212 740.7 415 87.5
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 8.7e-212 740.3 415 87.5
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.5e-211 738.8 415 87.5
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.4e-211 737.3 427 85.5
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.8e-210 735.3 415 87.0
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 4.8e-210 734.6 415 86.7
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 8.1e-210 733.8 415 86.5
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.1e-209 733.4 415 87.5
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 1.1e-209 733.4 415 87.0
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 3.1e-209 731.9 415 86.3
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 4.0e-209 731.5 415 87.0
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 4.0e-209 731.5 415 86.0
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 1.2e-208 729.9 415 85.8
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.5e-208 729.6 415 85.8
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.9e-208 726.9 429 84.4
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.3e-207 726.5 415 84.8
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.9e-207 725.3 412 86.2
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 3.8e-207 724.9 415 85.3
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 4.9e-207 724.5 417 85.9
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 8.4e-207 723.8 412 86.2
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 8.4e-207 723.8 415 85.5
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 8.4e-207 723.8 411 86.1
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 8.4e-207 723.8 415 84.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 1.1e-206 723.4 415 86.0
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.1e-206 723.4 415 84.3
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.4e-206 723.0 415 85.8
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.4e-206 722.2 412 86.7
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 3.2e-206 721.8 415 85.8
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 3.2e-206 721.8 415 85.8
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 3.2e-206 721.8 415 85.8
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 4.2e-206 721.5 414 86.2
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 9.3e-206 720.3 415 85.8
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 9.3e-206 720.3 415 86.0
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 9.3e-206 720.3 416 86.1
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.2e-205 719.9 415 85.5
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.1e-205 719.2 415 85.5
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 2.7e-205 718.8 415 85.5
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 2.7e-205 718.8 415 85.5
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.7e-205 718.8 415 85.8
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 1.0e-204 716.8 411 85.2
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 1.3e-204 716.5 415 84.3
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.3e-204 716.5 415 84.3
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.3e-204 715.7 415 85.8
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.3e-204 715.7 416 85.3
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 3.9e-204 714.9 415 85.8
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 5.1e-204 714.5 415 85.3
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 6.7e-204 714.1 415 85.1
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.1e-203 713.4 415 83.6
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 1.5e-203 713.0 415 85.5
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.9e-203 712.6 415 82.9
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.9e-203 712.6 416 84.9
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 4.3e-203 711.4 415 84.1
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 9.6e-203 710.3 428 83.9
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 4.8e-202 708.0 415 83.6
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 8.1e-202 707.2 413 85.5
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 8.1e-202 707.2 415 83.6
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 8.1e-202 707.2 415 85.1
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 6.9e-201 704.1 411 84.2
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.0e-199 700.3 422 81.0
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.4e-198 696.4 412 81.1
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 4.2e-198 694.9 415 82.9
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 5.5e-198 694.5 415 82.4
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 2.1e-197 692.6 415 81.7
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 4.6e-197 691.4 413 81.6
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.0e-196 690.3 415 81.4
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.8e-196 689.5 415 81.4
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 3.9e-196 688.3 423 83.7
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 7.4e-195 684.1 413 80.6
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 6.3e-194 681.0 412 80.6
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 2.4e-193 679.1 412 80.3
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.3e-193 677.9 414 80.7
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 3.2e-190 668.7 415 81.0
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 5.5e-190 667.9 415 80.7
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 3.6e-189 665.2 412 78.2
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.5e-187 659.8 415 79.8
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 2.2e-186 656.0 415 78.8
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 1.1e-185 653.7 415 79.3
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 3.1e-185 652.1 611 59.1
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 3.1e-185 652.1 415 75.7
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 1.2e-184 650.2 413 79.7
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 4.5e-184 648.3 415 75.7
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 5.9e-184 647.9 401 81.3
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.2e-182 641.7 415 77.6
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.7e-181 639.0 415 74.5
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.8e-180 636.3 423 76.8
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.3e-180 636.0 412 76.7
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 3.9e-180 635.2 415 74.2
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.9e-180 635.2 406 77.6
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.1e-180 634.8 419 76.1
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 9.7e-179 630.6 412 75.7
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.2e-178 629.4 415 76.1
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 2.8e-178 629.0 432 74.8
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.8e-177 626.3 410 76.1
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 9.1e-177 624.0 412 76.9
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.0e-175 620.5 353 84.1
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.2e-174 614.4 406 75.1
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.0e-172 610.5 465 69.5
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.7e-172 607.8 412 74.5
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.1e-169 600.5 354 82.8
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.4e-169 599.4 415 70.6
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 1.1e-166 590.5 330 88.2
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 4.2e-166 588.6 430 69.3
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 1.4e-164 583.6 410 71.0
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 2.3e-164 582.8 373 79.1
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.0e-164 582.0 413 70.0
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 3.3e-163 578.9 330 87.0
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 7.5e-163 577.8 337 82.8
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 5.9e-160 568.2 312 88.5
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 2.5e-158 562.8 405 65.7
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.2e-158 562.0 421 68.2
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 5.5e-158 561.6 416 69.7
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-154 548.5 399 69.7
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.3e-142 508.8 403 67.0
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 4.3e-142 508.8 420 62.1
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 8.0e-141 504.6 293 84.3
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.7e-136 489.6 281 84.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.0e-131 473.4 286 79.7
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 9.2e-129 464.5 429 57.3
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.9e-126 456.8 432 57.4
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 8.1e-117 424.9 237 88.2
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 8.4e-114 414.8 426 51.9
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 1.7e-106 390.6 280 70.7
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.2e-104 384.4 427 49.9
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 3.7e-93 346.3 467 44.8
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.6e-88 330.9 199 83.9
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 7.4e-86 322.0 171 91.8
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 2.9e-82 310.1 404 42.3
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.5e-73 280.4 241 61.4
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 4.8e-69 266.2 168 76.8
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.2e-64 251.5 168 76.2
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 4.7e-64 249.6 145 80.0
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 5.9e-59 232.6 158 75.9
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 2.3e-55 220.7 161 66.5
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.3e-53 212.6 246 54.1
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 2.8e-37 160.6 96 81.2
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 4.2e-33 146.7 86 82.6
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 8.9e-31 139.0 86 75.6
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 6.3e-29 132.9 126 59.5
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 2.4e-28 131.0 225 37.8
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.6e-24 118.2 72 80.6
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 1.7e-21 108.2 129 49.6
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 9.2e-20 102.4 58 81.0
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 7.8e-19 99.4 95 58.9
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 1.5e-17 95.1 168 39.3
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 2.5e-17 94.4 55 78.2
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 3.4e-14 84.0 55 67.3
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 5.8e-14 83.2 230 29.1
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 2.9e-13 80.9 48 81.2
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 3.3e-09 67.4 47 70.2
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 1.2e-08 65.5 94 41.5
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 1.6e-08 65.1 38 81.6
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.6e-08 65.1 70 48.6
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 2.8e-08 64.3 42 71.4
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 1.8e-07 61.6 32 81.2
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 4.0e-07 60.5 44 63.6
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 4.4e-06 57.0 30 83.3


User provided reference genes

Program Settings