Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 5.6e-278 960.3 480 100.0
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.4e-188 662.5 385 87.0
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 6.2e-144 515.0 377 71.4
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.4e-143 513.8 388 69.6
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 6.9e-143 511.5 373 72.1
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 9.0e-143 511.1 371 72.2
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 6.4e-141 505.0 378 69.8
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 5.4e-140 501.9 379 69.1
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 6.0e-139 498.4 374 69.3
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 6.6e-138 495.0 379 68.9
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 2.5e-137 493.0 379 69.1
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 4.3e-137 492.3 378 68.3
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 5.6e-137 491.9 373 68.9
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.8e-136 489.6 374 67.1
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.8e-136 489.6 375 68.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.8e-135 486.9 374 66.8
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 4.0e-135 485.7 378 66.7
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.0e-135 484.6 374 66.3
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 9.0e-135 484.6 368 68.8
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.0e-134 483.4 369 68.3
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.6e-134 483.0 350 69.7
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.6e-134 483.0 357 68.3
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.4e-134 482.6 376 66.8
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 3.4e-134 482.6 371 68.2
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.6e-134 481.5 374 66.0
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.9e-133 479.6 377 67.6
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.8e-133 479.2 376 68.4
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 3.8e-133 479.2 393 66.2
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 6.4e-133 478.4 394 65.2
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 8.4e-133 478.0 375 66.9
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.4e-132 477.2 355 69.0
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.9e-132 476.9 374 66.6
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 3.2e-132 476.1 377 65.8
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 3.2e-132 476.1 375 67.2
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 3.2e-132 476.1 376 66.0
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 4.2e-132 475.7 381 68.0
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 4.2e-132 475.7 366 67.5
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.1e-132 474.9 396 62.4
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.2e-131 474.2 378 65.9
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.2e-131 474.2 367 67.8
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.2e-131 474.2 394 65.0
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.6e-131 473.8 375 66.7
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-130 470.7 394 64.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.9e-130 469.2 380 65.5
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 5.1e-130 468.8 377 66.8
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 8.7e-130 468.0 382 65.4
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.1e-129 467.6 380 65.5
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.5e-129 467.2 391 63.7
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 7.4e-129 464.9 359 66.9
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.3e-128 464.2 360 66.7
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-128 463.8 339 70.5
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.8e-127 460.3 389 62.7
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 2.4e-127 459.9 375 65.3
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 4.0e-127 459.1 374 64.2
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 6.9e-127 458.4 375 64.8
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 9.0e-127 458.0 373 66.0
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.0e-126 456.8 376 62.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.4e-126 456.1 388 63.7
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 7.6e-126 454.9 373 65.4
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.3e-125 454.1 374 65.0
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 3.8e-125 452.6 376 62.8
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 4.9e-125 452.2 389 62.0
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 6.5e-125 451.8 390 62.6
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 8.4e-125 451.4 369 63.4
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 1.1e-124 451.1 385 61.0
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.1e-124 451.1 385 63.9
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.9e-124 450.3 373 63.5
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 2.5e-124 449.9 380 64.2
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.2e-124 449.5 373 62.7
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 3.2e-124 449.5 345 69.3
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 2.1e-123 446.8 378 63.0
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 4.6e-123 445.7 390 62.6
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 6.0e-123 445.3 373 64.1
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.9e-122 442.6 390 62.1
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.9e-121 440.3 355 65.4
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 3.3e-121 439.5 319 68.0
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.6e-120 437.2 396 61.1
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 6.2e-120 435.3 396 61.6
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 8.2e-120 434.9 395 60.5
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.4e-119 434.1 378 61.1
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.8e-119 433.7 346 66.5
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.1e-119 433.0 391 61.1
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.1e-119 433.0 391 61.1
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.2e-118 431.0 336 66.1
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 2.6e-118 429.9 330 67.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.4e-118 429.5 393 60.6
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 5.8e-118 428.7 334 66.2
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 2.9e-117 426.4 382 60.7
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 5.0e-117 425.6 378 61.6
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 7.2e-116 421.8 355 62.8
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 5.7e-113 412.1 375 61.6
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 9.0e-111 404.8 389 57.8
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 4.5e-110 402.5 408 56.4
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.1e-108 397.9 379 57.5
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 7.2e-108 395.2 352 59.4
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.3e-106 390.2 315 64.8
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.2e-101 373.6 320 60.0
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 9.1e-95 351.7 366 53.3
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.5e-92 344.4 242 70.2
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 2.7e-91 340.1 254 68.1
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.2e-86 324.7 262 61.8
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.1e-75 287.3 242 61.6
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.7e-75 287.0 313 52.7
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.8e-74 284.3 386 45.9
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 9.8e-73 278.5 222 66.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.1e-67 260.8 176 71.6
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 6.8e-66 255.8 215 64.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 2.2e-64 250.8 184 66.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 2.0e-62 244.2 188 61.7
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.8e-58 231.1 154 74.0
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 3.2e-55 220.3 218 50.5
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 5.4e-55 219.5 270 44.1
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 6.0e-54 216.1 204 53.9
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 6.8e-50 202.6 194 58.8
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.7e-45 188.0 124 75.0
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 1.9e-39 167.9 133 60.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 2.4e-39 167.5 133 60.9
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 5.4e-39 166.4 121 67.8
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 3.3e-36 157.1 305 35.1
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 2.1e-35 154.5 200 44.5
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.4e-33 147.1 209 49.3
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 8.4e-32 142.5 181 47.5
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-29 135.2 191 48.2
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 2.8e-27 127.5 104 59.6
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 8.4e-24 115.9 75 70.7
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.9e-23 114.8 72 76.4
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 4.2e-23 113.6 97 57.7
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-22 112.1 113 55.8
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 2.1e-22 111.3 220 34.5
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 5.6e-20 103.2 69 66.7
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.3e-19 102.1 122 46.7
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 3.4e-17 94.0 90 62.2
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 6.4e-16 89.7 47 80.9
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 9.3e-15 85.9 67 62.7


User provided reference genes

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