Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 9.1e-148 526.9 277 100.0
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 3.7e-133 478.4 277 92.8
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 4.9e-109 398.3 279 78.5
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.5e-105 386.7 279 75.3
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 3.6e-104 382.1 283 75.3
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 6.2e-104 381.3 283 74.6
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.3e-103 379.4 283 74.6
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 3.1e-103 379.0 284 72.9
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 3.1e-103 379.0 279 74.9
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 1.2e-102 377.1 279 74.2
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.2e-102 377.1 279 74.2
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.5e-102 376.7 278 74.1
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 4.4e-102 375.2 274 75.2
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 4.9e-101 371.7 279 73.8
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 4.9e-101 371.7 278 74.8
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 6.4e-101 371.3 277 72.9
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 8.4e-101 370.9 279 73.8
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.9e-100 369.8 281 74.0
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.4e-100 369.4 277 72.2
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.1e-100 368.6 280 76.1
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 4.1e-100 368.6 280 73.6
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 4.1e-100 368.6 279 71.7
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 7.1e-100 367.9 278 70.9
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.2e-99 367.1 279 73.8
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 4.6e-99 365.2 278 72.3
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 6.0e-99 364.8 279 73.5
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 7.8e-99 364.4 278 72.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 7.8e-99 364.4 281 71.5
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.3e-98 362.8 274 73.4
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 5.1e-98 361.7 275 72.4
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 8.6e-98 360.9 279 71.0
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 8.6e-98 360.9 277 70.4
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.1e-97 360.5 269 72.1
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 5.6e-97 358.2 279 70.6
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 9.6e-97 357.5 279 70.6
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 8.1e-96 354.4 279 68.5
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.4e-95 352.8 283 68.6
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 3.1e-95 352.4 281 70.1
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 3.1e-95 352.4 282 70.9
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 5.2e-95 351.7 281 69.8
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.8e-95 351.3 294 66.3
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.2e-94 350.5 278 70.1
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 4.4e-94 348.6 275 69.5
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.9e-94 347.4 279 68.5
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 9.9e-94 347.4 277 68.2
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-93 347.1 279 68.5
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 1.3e-93 347.1 281 69.0
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 2.2e-93 346.3 278 68.3
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 2.9e-93 345.9 281 68.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 3.8e-93 345.5 311 64.0
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.8e-93 345.5 279 68.1
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 6.4e-93 344.7 281 68.0
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 8.4e-93 344.4 281 68.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 1.1e-92 344.0 281 68.3
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.9e-92 343.2 281 66.2
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.4e-92 342.8 283 68.2
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.2e-92 342.4 281 68.3
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 4.2e-92 342.0 279 67.7
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 7.1e-92 341.3 278 67.6
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 9.3e-92 340.9 276 67.0
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 9.3e-92 340.9 280 68.6
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 2.1e-91 339.7 282 67.4
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.1e-91 339.7 278 68.0
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.0e-90 337.4 280 66.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.0e-90 335.9 290 64.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 8.7e-90 334.3 270 68.1
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.3e-88 330.5 278 66.2
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 4.8e-88 328.6 278 67.3
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.1e-87 327.4 278 66.2
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 4.0e-87 325.5 268 69.8
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 6.9e-87 324.7 273 66.3
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 9.0e-87 324.3 277 63.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 1.5e-86 323.6 273 66.3
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.0e-86 323.2 275 68.4
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.3e-85 320.5 274 65.3
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.3e-85 320.5 256 69.9
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.7e-85 320.1 279 64.9
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 8.4e-85 317.8 255 68.2
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 8.4e-85 317.8 282 63.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.9e-84 316.6 278 64.0
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 1.9e-84 316.6 278 64.0
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 2.4e-84 316.2 346 55.8
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 4.2e-84 315.5 278 64.4
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 8.7e-82 307.8 279 62.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 6.9e-79 298.1 270 61.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 1.5e-78 297.0 278 60.4
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.2e-77 293.1 228 71.1
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 5.5e-76 288.5 286 57.3
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 2.1e-75 286.6 280 58.2
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 6.0e-75 285.0 283 56.9
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.6e-72 276.9 264 60.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 1.4e-68 263.8 278 56.5
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.1e-67 260.0 278 52.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 1.8e-66 256.9 275 54.9
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 3.0e-66 256.1 198 69.2
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.3e-64 250.8 251 59.0
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 7.6e-62 241.5 189 67.2
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 8.5e-61 238.0 252 56.3
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 8.2e-56 221.5 202 60.9
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.7e-53 213.8 269 45.7
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 5.5e-52 208.8 199 63.3
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 5.7e-49 198.7 148 68.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 9.7e-49 198.0 271 42.8
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 8.2e-48 194.9 264 42.0
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 1.7e-45 187.2 350 40.3
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 1.9e-44 183.7 236 45.3
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-37 161.0 117 73.5
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.9e-37 159.8 117 72.6
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.1e-36 157.9 116 71.6
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 1.2e-35 154.5 140 60.7
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 2.1e-35 153.7 140 57.9
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.0e-30 137.1 111 71.2
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 4.5e-30 136.0 164 54.9
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 8.5e-29 131.7 93 73.1
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.9e-28 130.6 160 51.2
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 9.4e-28 128.3 93 69.9
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.6e-27 127.5 107 69.2
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.8e-26 124.0 117 59.8
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.5e-25 120.9 99 63.6
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 2.6e-25 120.2 120 56.7
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 4.4e-25 119.4 153 51.6
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.1e-23 113.2 74 79.7
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 5.4e-23 112.5 268 31.3
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.6e-22 110.9 255 31.0
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-22 110.5 79 67.1
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 1.3e-21 107.8 74 79.7
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 7.2e-20 102.1 66 74.2
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 4.7e-19 99.4 56 89.3
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.6e-17 93.6 80 63.8
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 2.2e-16 90.5 133 43.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.4e-15 87.8 78 57.7
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 9.2e-15 85.1 112 47.3
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 2.1e-11 73.9 82 57.3
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 8.9e-10 68.6 111 39.6
arahy.Tifrunner.gnm1.ann1.LXE9FZ Arachis hypogaea HOM05D005802 ORTHO05D006992 7.8e-06 55.5 35 68.6


User provided reference genes

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