Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 5.5e-198 694.1 355 100.0
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.3e-151 539.3 355 79.7
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 8.4e-130 467.6 389 66.6
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 4.8e-109 398.7 346 63.0
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.0e-103 380.9 204 95.1
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 6.1e-96 355.1 345 57.1
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 7.9e-96 354.8 346 56.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 4.4e-94 349.0 255 68.6
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 7.4e-94 348.2 360 55.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.7e-93 347.1 251 67.7
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 3.7e-93 345.9 358 55.0
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.4e-92 344.0 245 67.3
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.4e-92 344.0 360 54.7
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-92 344.0 236 70.3
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 2.4e-92 343.2 242 71.9
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 4.1e-92 342.4 360 54.2
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.5e-91 340.5 245 67.3
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.0e-91 340.1 360 55.8
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 5.9e-91 338.6 257 68.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.9e-91 338.6 359 54.0
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 7.7e-91 338.2 245 66.9
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 7.7e-91 338.2 346 54.6
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.0e-90 337.8 232 73.7
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.7e-90 337.0 245 68.6
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.2e-90 336.7 357 54.1
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 8.5e-90 334.7 251 64.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.9e-89 333.6 359 54.3
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.2e-89 332.4 220 75.0
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 4.2e-89 332.4 250 66.8
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 4.2e-89 332.4 245 67.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.0e-88 328.2 246 66.7
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 5.2e-87 325.5 227 70.9
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.7e-87 325.1 345 53.3
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 2.0e-86 323.6 280 62.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 2.0e-86 323.6 207 77.8
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.6e-86 323.2 256 64.1
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 3.3e-86 322.8 245 64.9
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 5.7e-86 322.0 359 53.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 9.7e-86 321.2 245 65.7
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 9.7e-86 321.2 209 74.2
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 6.3e-85 318.5 232 68.1
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.4e-84 317.4 239 68.2
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.8e-84 317.0 231 67.5
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 7.0e-84 315.1 251 61.8
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.2e-83 314.3 249 66.7
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.0e-83 313.5 188 81.9
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.0e-83 313.5 188 81.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 2.6e-83 313.2 247 66.0
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.7e-82 310.5 223 69.5
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 2.2e-82 310.1 241 65.1
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.2e-82 310.1 241 65.1
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.2e-82 310.1 205 74.1
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 2.9e-82 309.7 204 74.5
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.9e-81 307.0 216 71.3
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 3.2e-81 306.2 251 61.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.2e-81 306.2 246 61.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.2e-81 306.2 246 61.8
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.6e-80 302.8 302 56.6
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 8.0e-80 301.6 205 71.2
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-79 300.8 251 60.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.3e-79 300.1 187 77.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.0e-79 299.7 253 62.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.0e-79 299.7 205 70.7
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 4.0e-79 299.3 188 76.1
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 4.0e-79 299.3 251 63.3
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 5.2e-79 298.9 187 76.5
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 8.8e-79 298.1 231 67.1
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.2e-78 297.7 186 76.9
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.5e-78 297.4 186 76.9
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.0e-78 297.0 193 75.1
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.0e-78 297.0 205 69.3
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 4.4e-78 295.8 211 71.1
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 9.7e-78 294.7 201 74.1
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.3e-77 294.3 219 68.9
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.3e-77 294.3 211 69.2
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.7e-77 293.9 211 70.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.2e-77 293.5 233 61.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.8e-77 293.1 186 75.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 3.7e-77 292.7 191 75.9
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 8.3e-77 291.6 225 63.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.1e-76 291.2 188 76.6
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.2e-75 287.7 222 67.1
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.6e-75 287.3 221 66.5
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 5.9e-75 285.4 227 67.0
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.9e-74 283.1 252 58.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.9e-74 283.1 201 72.1
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.1e-73 281.2 188 72.9
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.5e-73 280.8 188 73.9
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.9e-73 280.4 203 69.0
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.9e-73 280.4 193 72.0
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 4.2e-73 279.3 202 71.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.6e-72 277.3 214 65.0
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 2.1e-72 276.9 173 76.9
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 6.1e-72 275.4 192 73.4
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 6.1e-72 275.4 189 72.5
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 8.0e-72 275.0 186 72.6
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 8.0e-72 275.0 201 69.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 8.0e-72 275.0 186 73.7
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 2.3e-71 273.5 194 70.1
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.3e-71 273.5 188 71.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.0e-71 273.1 202 68.3
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.8e-71 271.9 194 70.1
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.2e-70 271.2 188 71.3
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.2e-70 271.2 201 70.6
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.6e-70 270.0 188 71.8
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 3.4e-70 269.6 205 69.3
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.1e-68 264.6 222 63.5
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.4e-68 262.3 194 68.6
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 2.7e-67 260.0 167 74.9
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 2.8e-61 240.0 215 58.6
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.2e-59 234.6 186 67.2
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.6e-59 234.2 160 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.5e-59 233.0 192 63.5
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.5e-59 233.0 157 73.9
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 2.5e-57 226.9 183 60.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.6e-56 224.2 148 75.7
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.0e-55 221.5 162 71.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.1e-55 219.9 157 72.0
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.0e-54 217.2 133 77.4
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 2.6e-54 216.9 179 60.3
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 5.4e-52 209.1 175 56.6
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 7.8e-51 205.3 157 68.8
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.1e-44 182.2 108 78.7
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 4.6e-43 179.5 116 73.3
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-41 173.3 248 42.3
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 5.8e-38 162.5 92 82.6
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.4e-37 159.1 227 44.5
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 5.4e-36 156.0 149 54.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.1e-35 154.1 137 57.7
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.1e-35 154.1 128 61.7
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 3.3e-33 146.7 154 54.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.6e-32 144.4 92 75.0
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 4.4e-30 136.3 161 44.1
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.4e-28 131.3 141 52.5
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.9e-28 131.0 146 45.2
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 4.2e-28 129.8 133 48.1
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.7e-21 107.8 84 65.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.6e-19 99.8 175 40.0
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.5e-14 84.7 111 47.7
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 5.1e-10 69.7 43 72.1
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.7e-10 68.9 118 36.4
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.6e-08 64.7 104 46.2
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 3.7e-08 63.5 61 50.8
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.1e-07 60.5 56 58.9


User provided reference genes

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