Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0036700 Salix brachista HOM05D007841 ORTHO05D009919 3.0e-66 255.0 123 100.0
Potri.014G051850 Populus trichocarpa HOM05D007841 ORTHO05D009919 2.0e-14 82.8 41 100.0
Atru.chr5.91 Acer truncatum HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 97.6
Aa31LG1G11570 Aethionema arabicum HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
AL1G10060 Arabidopsis lyrata HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
AT1G02160 Arabidopsis thaliana HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
BcaB03g13636 Brassica carinata HOM05D000300 ORTHO05D000383 1.0e-13 80.5 41 95.1
C05p00040 Brassica napus HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
BolC5t28791H Brassica oleracea HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
Carub.0001s0004 Capsella rubella HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
CARHR000160 Cardamine hirsuta HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
Duzib138G1421 Durio zibethinus HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
ECA248G0141 Erigeron canadensis HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 97.6
Thhalv10009237m.g Eutrema salsugineum HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
Gohir.A12G098200 Gossypium hirsutum HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
Gohir.D12G101400 Gossypium hirsutum HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
Gorai.008G110500 Gossypium raimondii HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 95.1
HanXRQChr01g0019691 Helianthus annuus HOM05D007841 ORTHO05D009919 1.0e-13 80.5 41 97.6
COL.COLO4_12370 Corchorus olitorius HOM05D007841 ORTHO05D009919 2.2e-13 79.3 41 95.1
Lsat_1_v5_gn_1_83981 Lactuca sativa HOM05D007841 ORTHO05D009919 2.2e-13 79.3 41 95.1
Psat3g152880 Pisum sativum HOM05D007841 ORTHO05D009919 2.2e-13 79.3 41 95.1
Lj1g0014858 Lotus japonicus HOM05D007841 ORTHO05D009919 3.8e-13 78.6 41 95.1
Oeu034848.1 Olea europaea HOM05D007841 ORTHO05D009919 3.8e-13 78.6 41 95.1
CANSAT25G3347 Cannabis sativa HOM05D007841 ORTHO05D009919 5.0e-13 78.2 41 92.7
CANSAT25G3825 Cannabis sativa HOM05D007841 ORTHO05D009919 5.0e-13 78.2 41 92.7
CAN.G756.38 Capsicum annuum HOM05D007841 ORTHO05D009919 5.0e-13 78.2 41 92.7
Hma1.2p1_2138F.1_g314930 Hydrangea macrophylla HOM05D007841 ORTHO05D009919 5.0e-13 78.2 41 92.7
Medtr7g050540 Medicago truncatula HOM05D007841 ORTHO05D009919 5.0e-13 78.2 41 92.7
PSO675G0834 Papaver somniferum HOM05D007841 ORTHO05D009919 5.0e-13 78.2 41 92.7
Actinidia30942 Actinidia chinensis HOM05D007841 ORTHO05D009919 6.5e-13 77.8 41 90.2
Phvul.008G138900 Phaseolus vulgaris HOM05D007841 ORTHO05D009919 6.5e-13 77.8 41 92.7
Prupe.2G120100 Prunus persica HOM05D007841 ORTHO05D009919 6.5e-13 77.8 41 90.2
THA.LOC104814059 Tarenaya hassleriana HOM05D007841 ORTHO05D009919 1.1e-12 77.0 41 92.7
Glyma.08G340600 Glycine max HOM05D007841 ORTHO05D009919 1.4e-12 76.6 41 92.7
RcHm_v2.0_Chr1g0345181 Rosa chinensis HOM05D007841 ORTHO05D009919 1.4e-12 76.6 41 90.2
Solyc01g088770.3 Solanum lycopersicum HOM05D007841 ORTHO05D009919 1.4e-12 76.6 41 90.2
Sopen01g035610 Solanum pennellii HOM05D007841 ORTHO05D009919 1.4e-12 76.6 41 90.2
PGSC0003DMG400001726 Solanum tuberosum HOM05D007841 ORTHO05D009919 1.4e-12 76.6 41 90.2
CiPaw.14G018000 Carya illinoinensis HOM05D007841 ORTHO05D009919 1.9e-12 76.3 41 87.8
Lalb_Chr03g0040951 Lupinus albus HOM05D007841 ORTHO05D009919 1.9e-12 76.3 41 92.7
PSO732G0215 Papaver somniferum HOM05D007841 ORTHO05D009919 2.5e-12 75.9 41 90.2
PGR004G1954 Punica granatum HOM05D007841 ORTHO05D009919 2.5e-12 75.9 41 90.2
arahy.Tifrunner.gnm1.ann1.K94MSK Arachis hypogaea HOM05D007841 ORTHO05D009919 3.2e-12 75.5 40 90.0
EL10Ac1g00736 Beta vulgaris HOM05D007841 ORTHO05D009919 3.2e-12 75.5 41 87.8
Cc02_g25410 Coffea canephora HOM05D007841 ORTHO05D009919 3.2e-12 75.5 41 87.8
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 3.2e-12 75.5 49 77.6
ClCG05G003010 Citrullus lanatus HOM05D007841 ORTHO05D009919 1.6e-11 73.2 41 87.8
Thecc.01G400700 Theobroma cacao HOM05D007841 ORTHO05D009919 1.6e-11 73.2 42 92.9
MD02G1221100 Malus domestica HOM05D007841 ORTHO05D009919 2.1e-11 72.8 41 85.4
Aqoxy7G00835 Aquilegia oxysepala HOM05D007841 ORTHO05D009919 3.6e-11 72.0 41 87.8
Sed0011386 Sechium edule HOM05D007841 ORTHO05D009919 3.6e-11 72.0 41 87.8
Eucgr.D01199 Eucalyptus grandis HOM05D007841 ORTHO05D009919 6.1e-11 71.2 41 85.4
CsaV3_3G010620 Cucumis sativus L. HOM05D007841 ORTHO05D009919 7.9e-11 70.9 41 85.4
Manes.05G057100 Manihot esculenta HOM05D007841 ORTHO05D009919 7.9e-11 70.9 35 97.1
Migut.N01723 Erythranthe guttata HOM05D007841 ORTHO05D009919 1.8e-10 69.7 41 82.9
MD07G1096500 Malus domestica HOM05D007841 ORTHO05D009919 2.3e-10 69.3 41 85.4
GSVIVG01018320001 Vitis vinifera HOM05D007841 ORTHO05D009919 6.7e-10 67.8 39 84.6
FvH4_7g09140 Fragaria vesca HOM05D007841 ORTHO05D009919 2.6e-09 65.9 41 82.9
CAN.G756.35 Capsicum annuum HOM05D007841 ORTHO05D009919 7.4e-09 64.3 33 93.9
unitig_22.g6702 Utricularia gibba HOM05D007841 ORTHO05D009919 7.4e-09 64.3 41 78.0
Zm00001eb067220 Zea mays HOM05D007841 ORTHO05D009919 4.8e-08 61.6 39 76.9
Os04g0665000 Oryza sativa ssp. japonica HOM05D007841 ORTHO05D009919 6.3e-08 61.2 39 76.9
FAN06G3108 Fragaria x ananassa HOM05D007841 ORTHO05D009919 7.0e-07 57.8 36 80.6
Pp3c22_2080 Physcomitrium patens HOM05D007841 ORTHO05D009919 2.0e-06 56.2 40 70.0
Haze_02887 Corylus avellana HOM05D000061 ORTHO05D000915 3.4e-06 55.5 29 79.3
BraA10t42285Z Brassica rapa HOM05D007841 ORTHO05D009919 4.5e-06 55.1 25 96.0
Sp1g00090 Schrenkiella parvula HOM05D007841 ORTHO05D009919 4.5e-06 55.1 25 96.0


User provided reference genes

Program Settings