Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0021100 Salix brachista HOM05D000955 ORTHO05D001429 4.7e-73 277.7 135 100.0
Potri.014G030200 Populus trichocarpa HOM05D000955 ORTHO05D001429 1.5e-23 113.2 89 66.3
Sabra14G0021000 Salix brachista HOM05D000955 ORTHO05D001429 4.3e-18 95.1 89 60.7
Potri.014G030100 Populus trichocarpa HOM05D000955 ORTHO05D001429 7.4e-18 94.4 89 60.7
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.5e-15 85.1 96 47.9
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.5e-15 85.1 96 47.9
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.5e-15 85.1 96 47.9
Thecc.04G032600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.6e-12 76.6 85 45.9
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 2.7e-12 75.9 59 64.4
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 6.0e-12 74.7 98 42.9
COL.COLO4_08734 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.5e-10 70.1 62 56.5
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 1.9e-10 69.7 67 52.2
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 1.9e-10 69.7 73 53.4
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 2.5e-10 69.3 89 41.6
Manes.18G036400 Manihot esculenta HOM05D000955 ORTHO05D001429 2.5e-10 69.3 91 39.6
TWI36G1204 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 2.5e-10 69.3 85 42.4
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 9.6e-10 67.4 85 42.4
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 1.6e-09 66.6 69 46.4
Haze_17535 Corylus avellana HOM05D000955 ORTHO05D001429 1.6e-09 66.6 59 55.9
Manes.05G173300 Manihot esculenta HOM05D000955 ORTHO05D001429 1.6e-09 66.6 58 58.6
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.6e-09 66.6 73 52.1
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.1e-09 66.2 80 50.0
Atru.chr13.679 Acer truncatum HOM05D000955 ORTHO05D001429 2.8e-09 65.9 61 52.5
QL02p005180 Quercus lobata HOM05D000955 ORTHO05D001429 2.8e-09 65.9 69 43.5
Cfa018534 Carpinus fangiana HOM05D000955 ORTHO05D001429 3.7e-09 65.5 59 54.2
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 3.7e-09 65.5 82 41.5
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.8e-09 65.1 80 48.8
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.8e-09 65.1 79 46.8
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.8e-09 65.1 57 50.9
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 6.2e-09 64.7 81 49.4
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 6.2e-09 64.7 80 47.5
COL.COLO4_26490 Corchorus olitorius HOM05D000955 ORTHO05D001429 6.2e-09 64.7 66 45.5
QL02p005194 Quercus lobata HOM05D000955 ORTHO05D001429 6.2e-09 64.7 59 47.5
Gohir.D05G263700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.2e-09 64.3 73 41.1
Gorai.009G275500 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.2e-09 64.3 73 41.1
QL02p005175 Quercus lobata HOM05D000955 ORTHO05D001429 8.2e-09 64.3 71 42.3
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.1e-08 63.9 59 52.5
COL.COLO4_17164 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.1e-08 63.9 57 52.6
Cfa018535 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.4e-08 63.5 72 45.8
Manes.05G173400 Manihot esculenta HOM05D000955 ORTHO05D001429 1.8e-08 63.2 66 48.5
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 2.4e-08 62.8 67 47.8
AUR62014425 Chenopodium quinoa HOM05D000955 ORTHO05D001429 2.4e-08 62.8 81 43.2
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.1e-08 62.4 80 42.5
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 3.1e-08 62.4 80 42.5
QL02p005131 Quercus lobata HOM05D000955 ORTHO05D001429 3.1e-08 62.4 75 40.0
Solyc04g079080.2 Solanum lycopersicum HOM05D000955 ORTHO05D003340 3.1e-08 62.4 57 50.9
Sopen04g032680 Solanum pennellii HOM05D000955 ORTHO05D001429 3.1e-08 62.4 57 50.9
Prupe.1G436900 Prunus persica HOM05D000955 ORTHO05D001429 4.0e-08 62.0 56 46.4
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 4.0e-08 62.0 57 50.9
Thecc.04G031300 Theobroma cacao HOM05D000955 ORTHO05D001429 4.0e-08 62.0 70 48.6
Thecc.04G032100 Theobroma cacao HOM05D000955 ORTHO05D001429 4.0e-08 62.0 64 45.3
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 5.3e-08 61.6 71 45.1
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 5.3e-08 61.6 59 50.8
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 5.3e-08 61.6 99 39.4
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.3e-08 61.6 66 51.5
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.3e-08 61.6 75 49.3
QL02p005214 Quercus lobata HOM05D000023 ORTHO05D000014 5.3e-08 61.6 69 43.5
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 5.3e-08 61.6 64 48.4
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 6.9e-08 61.2 71 45.1
CAN.G371.26 Capsicum annuum HOM05D000955 ORTHO05D001429 6.9e-08 61.2 79 39.2
Prupe.1G437100 Prunus persica HOM05D000955 ORTHO05D001429 6.9e-08 61.2 56 46.4
PGR031G2327 Punica granatum HOM05D000955 ORTHO05D001429 6.9e-08 61.2 73 39.7
QL02p005085 Quercus lobata HOM05D000955 ORTHO05D001429 6.9e-08 61.2 94 34.0
Thecc.04G031700 Theobroma cacao HOM05D000955 ORTHO05D001429 6.9e-08 61.2 82 41.5
AUR62019161 Chenopodium quinoa HOM05D000955 ORTHO05D001429 9.0e-08 60.8 81 42.0
AUR62034572 Chenopodium quinoa HOM05D000955 ORTHO05D001429 9.0e-08 60.8 81 42.0
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 9.0e-08 60.8 56 53.6
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 1.2e-07 60.5 71 45.1
Cpa.g.sc49.10 Carica papaya HOM05D000955 ORTHO05D001429 1.2e-07 60.5 68 39.7
Potri.008G079132 Populus trichocarpa HOM05D000955 ORTHO05D001429 1.2e-07 60.5 76 42.1
Atru.chr13.684 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-07 60.1 62 48.4
Manes.05G172801 Manihot esculenta HOM05D000955 ORTHO05D001429 1.5e-07 60.1 63 46.0
Sabra14G0021200 Salix brachista HOM05D000955 ORTHO05D001429 1.5e-07 60.1 65 58.5
Manes.04G103000 Manihot esculenta HOM05D000955 ORTHO05D001429 2.0e-07 59.7 70 41.4
Manes.05G173000 Manihot esculenta HOM05D000955 ORTHO05D001429 2.0e-07 59.7 63 46.0
Potri.008G079066 Populus trichocarpa HOM05D000955 ORTHO05D001429 2.0e-07 59.7 68 44.1
COL.COLO4_08736 Corchorus olitorius HOM05D000955 ORTHO05D001429 2.6e-07 59.3 88 36.4
Gohir.A05G261550 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.6e-07 59.3 73 38.4
Thecc.05G186300 Theobroma cacao HOM05D000955 ORTHO05D001429 2.6e-07 59.3 54 50.0
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 2.6e-07 59.3 57 52.6
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 3.4e-07 58.9 82 42.7
Manes.04G102800 Manihot esculenta HOM05D000955 ORTHO05D001429 3.4e-07 58.9 64 40.6
RcHm_v2.0_Chr6g0307841 Rosa chinensis HOM05D000955 ORTHO05D001429 3.4e-07 58.9 83 39.8
Thecc.08G009100 Theobroma cacao HOM05D000955 ORTHO05D001429 3.4e-07 58.9 89 39.3
COL.COLO4_26496 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.5e-07 58.5 73 42.5
COL.COLO4_26501 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.5e-07 58.5 76 36.8
Thhalv10001753m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 4.5e-07 58.5 89 31.5
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.5e-07 58.5 80 41.2
Gohir.D05G263600 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.5e-07 58.5 62 45.2
Manes.04G103100 Manihot esculenta HOM05D000955 ORTHO05D001429 4.5e-07 58.5 64 40.6
Gohir.A05G261500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.8e-07 58.2 62 45.2
Manes.04G102900 Manihot esculenta HOM05D000955 ORTHO05D001429 5.8e-07 58.2 64 40.6
Sc26g0000780 Simmondsia chinensis HOM05D000955 ORTHO05D001429 5.8e-07 58.2 85 38.8
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 7.6e-07 57.8 65 47.7
COL.COLO4_26491 Corchorus olitorius HOM05D000955 ORTHO05D001429 7.6e-07 57.8 66 43.9
Manes.04G102700 Manihot esculenta HOM05D000955 ORTHO05D001429 7.6e-07 57.8 64 42.2
Prupe.1G437200 Prunus persica HOM05D000955 ORTHO05D001429 7.6e-07 57.8 56 42.9
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 1.0e-06 57.4 69 44.9
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 1.0e-06 57.4 66 48.5
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.0e-06 57.4 67 41.8
CiPaw.15G060200 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.0e-06 57.4 60 43.3
CiPaw.16G044800 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.0e-06 57.4 90 32.2
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 1.0e-06 57.4 57 49.1
Manes.18G036200 Manihot esculenta HOM05D000955 ORTHO05D001429 1.0e-06 57.4 57 49.1
Ciclev10003391m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.3e-06 57.0 84 36.9
COL.COLO4_26489 Corchorus olitorius HOM05D000955 ORTHO05D001429 1.3e-06 57.0 70 40.0
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.3e-06 57.0 88 36.4
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.3e-06 57.0 64 43.8
Prupe.1G436800 Prunus persica HOM05D000955 ORTHO05D001429 1.3e-06 57.0 56 42.9
Prupe.1G437000 Prunus persica HOM05D000955 ORTHO05D001429 1.3e-06 57.0 56 42.9
CiPaw.15G060100 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.7e-06 56.6 78 39.7
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 1.7e-06 56.6 56 50.0
RcHm_v2.0_Chr3g0490571 Rosa chinensis HOM05D000955 ORTHO05D001429 1.7e-06 56.6 86 38.4
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 1.7e-06 56.6 77 42.9
Thecc.08G009600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.7e-06 56.6 61 41.0
Atru.chr13.677 Acer truncatum HOM05D000955 ORTHO05D001429 2.2e-06 56.2 85 38.8
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.2e-06 56.2 77 41.6
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 2.2e-06 56.2 79 43.0
Thecc.08G009300 Theobroma cacao HOM05D000955 ORTHO05D001429 2.2e-06 56.2 72 40.3
Gohir.D05G263800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 2.9e-06 55.8 69 43.5
Gorai.009G275600 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.9e-06 55.8 69 43.5
Lsat_1_v5_gn_6_113880 Lactuca sativa HOM05D000955 ORTHO05D001429 2.9e-06 55.8 64 43.8
Manes.05G172901 Manihot esculenta HOM05D000955 ORTHO05D001429 2.9e-06 55.8 65 44.6
Thecc.08G009000 Theobroma cacao HOM05D000955 ORTHO05D001429 2.9e-06 55.8 71 40.8
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 3.8e-06 55.5 59 42.4
Gohir.A03G076800 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.8e-06 55.5 71 35.2
Gohir.A05G261600 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.8e-06 55.5 69 43.5
Cfa018542 Carpinus fangiana HOM05D000955 ORTHO05D001429 4.9e-06 55.1 79 39.2
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 4.9e-06 55.1 57 47.4
MELO3C010863.2 Cucumis melo HOM05D000955 ORTHO05D001429 4.9e-06 55.1 56 48.2
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.9e-06 55.1 57 49.1
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.9e-06 55.1 57 49.1
Lsat_1_v5_gn_4_125420 Lactuca sativa HOM05D000955 ORTHO05D001429 4.9e-06 55.1 59 44.1
Manes.05G172701 Manihot esculenta HOM05D000955 ORTHO05D001429 4.9e-06 55.1 65 44.6
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 6.5e-06 54.7 59 42.4
Gohir.D02G091500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 6.5e-06 54.7 56 42.9
Gorai.005G102600 Gossypium raimondii HOM05D000955 ORTHO05D001429 6.5e-06 54.7 56 42.9
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 6.5e-06 54.7 64 42.2
PGSC0003DMG400007983 Solanum tuberosum HOM05D000955 ORTHO05D001429 6.5e-06 54.7 57 42.1
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 6.5e-06 54.7 58 43.1
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 6.5e-06 54.7 73 42.5
BcaB01g03395 Brassica carinata HOM05D000135 ORTHO05D000203 8.4e-06 54.3 131 26.7
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 8.4e-06 54.3 61 44.3
CsaV3_2G027840 Cucumis sativus L. HOM05D000955 ORTHO05D001429 8.4e-06 54.3 56 48.2
MBI02_g02981_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 8.4e-06 54.3 83 34.9
Manes.18G035900 Manihot esculenta HOM05D000955 ORTHO05D003340 8.4e-06 54.3 76 34.2
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 8.4e-06 54.3 99 37.4
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 8.4e-06 54.3 67 40.3
vmacro23310 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 8.4e-06 54.3 67 40.3


User provided reference genes

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