Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 7.2e-93 344.0 182 100.0
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.9e-79 297.7 180 86.7
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.4e-72 275.8 179 82.1
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.2e-58 230.3 182 69.2
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.1e-56 223.8 176 69.9
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 4.1e-56 221.9 180 66.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.9e-55 218.0 145 76.6
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.3e-54 216.1 146 74.7
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 3.0e-54 215.7 178 64.6
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.0e-54 215.7 179 65.9
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 6.6e-54 214.5 172 66.9
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.1e-53 213.8 177 65.0
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.1e-53 213.8 181 68.0
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.9e-53 213.0 177 66.1
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.5e-53 212.6 172 65.1
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.5e-53 212.6 172 66.9
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 4.3e-53 211.8 178 66.3
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 4.3e-53 211.8 152 71.7
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 9.5e-53 210.7 172 66.9
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.5e-53 210.7 172 66.9
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 9.5e-53 210.7 179 65.4
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 9.5e-53 210.7 171 67.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 9.5e-53 210.7 172 66.3
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.2e-52 210.3 150 68.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.6e-52 209.9 143 74.1
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.1e-52 209.5 151 72.8
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.1e-52 209.5 170 68.2
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.1e-52 209.5 174 64.9
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 3.6e-52 208.8 153 71.2
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 4.7e-52 208.4 175 62.9
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 4.7e-52 208.4 175 62.9
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 4.7e-52 208.4 178 63.5
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.2e-52 208.0 179 65.9
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 8.0e-52 207.6 180 61.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.8e-51 206.5 182 64.3
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 3.1e-51 205.7 174 63.2
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 3.1e-51 205.7 152 72.4
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 3.1e-51 205.7 170 64.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 4.0e-51 205.3 172 64.0
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 5.2e-51 204.9 147 72.1
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 6.8e-51 204.5 142 74.6
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.0e-50 203.0 147 73.5
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.6e-50 202.6 146 69.9
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 7.5e-50 201.1 148 70.9
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.9e-49 198.4 148 70.3
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.1e-48 197.2 176 63.1
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.4e-48 196.8 146 68.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.4e-48 196.8 169 63.9
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 4.1e-48 195.3 189 60.3
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 4.1e-48 195.3 184 58.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.2e-47 193.7 178 58.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.2e-47 193.7 152 66.4
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.6e-47 193.4 174 59.2
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 4.6e-47 191.8 178 59.6
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.7e-46 189.9 143 68.5
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 5.0e-46 188.3 186 58.6
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 5.0e-46 188.3 172 61.0
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 6.6e-46 188.0 177 58.8
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.6e-46 188.0 179 58.1
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-45 186.4 150 62.0
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.9e-45 186.4 152 63.8
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 3.3e-45 185.7 153 61.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.6e-45 184.9 150 66.0
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 7.3e-45 184.5 145 62.1
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 7.3e-45 184.5 145 62.1
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.3e-45 184.5 179 57.5
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 9.5e-45 184.1 150 61.3
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 9.5e-45 184.1 179 54.2
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.2e-44 183.7 148 66.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.6e-44 183.3 151 62.3
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.6e-44 183.3 180 55.6
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.6e-44 182.2 153 60.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.6e-44 182.2 145 61.4
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 4.7e-44 181.8 145 61.4
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.2e-44 181.4 146 63.7
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 6.2e-44 181.4 174 54.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 6.2e-44 181.4 237 46.8
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 6.2e-44 181.4 146 64.4
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 8.1e-44 181.0 150 61.3
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 8.1e-44 181.0 150 61.3
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 8.1e-44 181.0 124 74.2
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 8.1e-44 181.0 149 61.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 8.1e-44 181.0 152 59.2
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.1e-43 180.6 146 61.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.8e-43 179.9 153 60.1
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.8e-43 179.9 180 54.4
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.8e-43 179.9 178 54.5
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 3.1e-43 179.1 179 55.3
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 4.0e-43 178.7 172 61.0
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.2e-43 178.3 162 60.5
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-42 177.2 149 63.1
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.2e-42 177.2 180 52.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.6e-42 176.0 150 61.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 5.8e-42 174.9 150 59.3
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 9.8e-42 174.1 124 70.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.1e-40 170.6 175 54.3
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.4e-40 170.2 182 54.4
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.2e-40 169.1 129 71.3
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 7.1e-40 167.9 142 62.0
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.1e-39 166.4 178 53.4
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.0e-38 164.1 144 59.0
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.3e-38 163.7 148 58.1
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 2.3e-38 162.9 156 55.1
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 3.0e-38 162.5 150 58.0
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.1e-37 160.6 172 51.2
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.5e-37 160.2 224 43.8
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 2.5e-37 159.5 118 67.8
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 7.3e-37 157.9 150 54.7
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 7.3e-37 157.9 138 60.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.1e-35 154.1 172 55.2
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.1e-35 152.5 145 56.6
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 5.2e-35 151.8 141 56.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-34 149.4 124 58.9
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 4.4e-34 148.7 117 61.5
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 9.9e-34 147.5 122 62.3
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 8.4e-33 144.4 151 53.6
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 8.4e-33 144.4 152 56.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 9.2e-32 141.0 117 63.2
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-30 137.1 122 59.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-29 134.0 150 47.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-29 134.0 150 47.3
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.4e-27 126.3 157 45.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 8.9e-27 124.4 128 53.9
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 8.9e-27 124.4 128 53.9
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.6e-26 122.9 143 46.9
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 9.9e-26 120.9 243 35.0
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 3.8e-25 119.0 159 40.9
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 1.3e-22 110.5 182 37.9
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 5.1e-22 108.6 103 53.4
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.1e-22 108.6 176 41.5
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.2e-20 101.7 102 52.9
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.1e-20 101.3 113 54.9
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.5e-18 97.1 77 67.5
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 5.8e-18 95.1 168 39.3
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 3.2e-16 89.4 116 49.1
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 2.1e-15 86.7 83 60.2
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 6.7e-14 81.6 88 51.1
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 3.3e-13 79.3 88 50.0
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 7.4e-13 78.2 88 50.0
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-12 77.4 88 50.0
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.3e-12 77.4 88 50.0
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.8e-12 76.3 84 51.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.8e-12 76.3 84 51.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 9.0e-11 71.2 48 72.9
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 5.5e-08 62.0 46 65.2


User provided reference genes

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