Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 9.7e-77 290.0 144 100.0
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 6.6e-49 197.6 144 74.3
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.5e-24 115.9 144 52.8
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.1e-23 110.9 140 49.3
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 4.4e-21 105.1 145 48.3
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 7.6e-21 104.4 139 48.9
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.9e-20 102.4 136 49.3
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 8.4e-20 100.9 136 50.0
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.4e-19 99.4 134 47.0
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.4e-19 99.4 143 45.5
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 3.2e-19 99.0 146 43.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 3.2e-19 99.0 139 44.6
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 9.3e-19 97.4 140 47.9
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.2e-18 97.1 143 43.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 3.5e-18 95.5 140 42.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.5e-18 95.5 140 44.3
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 7.8e-18 94.4 139 44.6
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.8e-18 94.4 143 44.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.0e-17 94.0 134 47.0
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-17 93.6 140 43.6
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 2.3e-17 92.8 142 43.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.1e-17 91.7 82 61.0
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.6e-17 91.3 140 43.6
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.5e-16 90.1 99 56.6
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-16 90.1 140 42.1
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 1.9e-16 89.7 135 44.4
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 3.3e-16 89.0 142 43.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.3e-16 88.6 140 41.4
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.3e-16 88.6 140 41.4
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.6e-16 88.2 70 62.9
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.3e-15 87.0 82 62.2
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-15 87.0 70 65.7
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.6e-15 85.5 143 44.1
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.6e-15 85.5 143 40.6
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.8e-15 85.1 76 59.2
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.8e-15 85.1 82 61.0
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.8e-15 85.1 77 57.1
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.1e-15 84.3 82 61.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.8e-14 83.2 78 55.1
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 5.3e-14 81.6 143 43.4
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 5.3e-14 81.6 144 43.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 5.3e-14 81.6 143 43.4
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 5.3e-14 81.6 68 63.2
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 6.9e-14 81.3 144 42.4
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.2e-13 80.5 91 49.5
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.5e-13 80.1 124 47.6
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.5e-13 80.1 77 54.5
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.5e-13 80.1 68 60.3
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.5e-13 80.1 83 56.6
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.6e-13 79.3 141 43.3
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-13 79.3 82 53.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.6e-13 79.3 82 57.3
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.4e-13 79.0 72 59.7
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 3.4e-13 79.0 69 65.2
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 3.4e-13 79.0 80 53.8
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 4.5e-13 78.6 90 51.1
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.5e-13 78.6 134 38.1
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.5e-13 78.6 80 53.8
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 5.8e-13 78.2 139 41.0
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 9.9e-13 77.4 71 57.7
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 2.2e-12 76.3 73 58.9
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.2e-12 76.3 95 50.5
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.9e-12 75.9 143 39.2
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.9e-12 75.9 139 41.0
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.9e-12 75.1 70 54.3
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 4.9e-12 75.1 70 54.3
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 8.4e-12 74.3 63 57.1
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.1e-11 73.9 144 38.9
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.9e-11 73.2 65 61.5
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 3.2e-11 72.4 74 54.1
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.2e-11 72.4 141 39.0
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.2e-11 72.4 144 39.6
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 4.2e-11 72.0 77 54.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 5.4e-11 71.6 82 53.7
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 5.4e-11 71.6 142 38.7
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.6e-10 70.1 87 50.6
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.6e-10 70.1 70 58.6
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.1e-10 69.7 134 35.8
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 2.7e-10 69.3 79 48.1
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.5e-10 68.9 94 44.7
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 3.5e-10 68.9 85 50.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.5e-10 68.9 79 46.8
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 4.6e-10 68.6 57 61.4
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 4.6e-10 68.6 141 36.9
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 4.6e-10 68.6 140 37.1
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 6.0e-10 68.2 85 51.8
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.0e-10 68.2 80 52.5
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 6.0e-10 68.2 92 46.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 7.9e-10 67.8 71 56.3
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 7.9e-10 67.8 104 46.2
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 7.9e-10 67.8 80 50.0
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.0e-09 67.4 83 49.4
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.0e-09 67.4 44 77.3
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.3e-09 67.0 77 57.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.3e-09 67.0 86 47.7
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.3e-09 67.0 86 47.7
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.8e-09 66.6 139 37.4
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 2.3e-09 66.2 138 39.1
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 2.3e-09 66.2 138 39.1
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.3e-09 66.2 42 69.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.3e-09 66.2 85 49.4
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.3e-09 66.2 75 45.3
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.0e-09 65.9 112 44.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 3.0e-09 65.9 67 55.2
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 3.0e-09 65.9 77 46.8
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.9e-09 65.5 40 70.0
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 3.9e-09 65.5 52 61.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.9e-09 65.5 103 38.8
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 5.1e-09 65.1 66 50.0
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 6.7e-09 64.7 79 45.6
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 8.7e-09 64.3 78 51.3
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 8.7e-09 64.3 85 45.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.1e-08 63.9 70 50.0
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 1.5e-08 63.5 113 42.5
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.9e-08 63.2 77 50.6
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.9e-08 63.2 93 41.9
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.9e-08 63.2 84 50.0
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.5e-08 62.8 46 67.4
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 2.5e-08 62.8 87 50.6
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.3e-08 62.4 44 65.9
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.3e-08 62.4 78 51.3
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 4.3e-08 62.0 38 73.7
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 5.6e-08 61.6 48 66.7
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 5.6e-08 61.6 78 50.0
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 5.6e-08 61.6 108 34.3
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 7.4e-08 61.2 137 36.5
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 1.6e-07 60.1 41 68.3
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 1.6e-07 60.1 57 57.9
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 2.8e-07 59.3 90 45.6
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 3.7e-07 58.9 38 71.1
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 4.8e-07 58.5 53 62.3
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 4.8e-07 58.5 90 41.1
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.2e-07 58.2 63 55.6
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 8.1e-07 57.8 64 45.3
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 8.1e-07 57.8 138 34.8
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 8.1e-07 57.8 123 37.4
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 8.1e-07 57.8 89 42.7
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 1.1e-06 57.4 77 39.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 1.4e-06 57.0 48 62.5
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.8e-06 56.6 66 53.0
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.1e-06 55.8 103 44.7
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.1e-06 55.8 145 37.2
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 6.9e-06 54.7 81 43.2
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 6.9e-06 54.7 114 39.5
AUR62041736 Chenopodium quinoa HOM05D004288 ORTHO05D004997 9.0e-06 54.3 64 50.0


User provided reference genes

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