Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 8.6e-145 516.9 254 100.0
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.4e-134 483.0 255 94.5
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 1.4e-102 376.7 210 81.9
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 2.4e-102 375.9 224 79.9
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 6.9e-102 374.4 258 71.7
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 9.0e-102 374.0 225 77.8
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 2.6e-101 372.5 255 71.4
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.4e-101 372.1 256 72.3
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 1.4e-99 366.7 260 70.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 5.5e-99 364.8 234 73.9
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 7.2e-99 364.4 248 72.6
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 3.6e-98 362.1 264 68.2
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 6.1e-98 361.3 244 70.1
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 7.9e-98 360.9 253 69.6
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.4e-97 360.1 252 70.2
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.4e-97 360.1 229 74.2
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 1.8e-97 359.8 243 71.2
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 2.3e-97 359.4 220 77.3
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.3e-97 359.4 220 75.9
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 3.0e-97 359.0 245 71.4
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.9e-97 358.6 258 70.2
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 6.7e-97 357.8 232 72.8
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 6.7e-97 357.8 252 69.4
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 8.8e-97 357.5 245 69.8
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 4.3e-96 355.1 222 74.3
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 5.7e-96 354.8 198 81.3
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 5.7e-96 354.8 231 72.7
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 9.7e-96 354.0 211 76.8
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 9.7e-96 354.0 248 68.5
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.3e-95 353.6 197 82.7
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.8e-95 352.4 229 72.5
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 3.7e-95 352.1 259 67.6
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 3.7e-95 352.1 256 67.2
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 3.7e-95 352.1 255 67.1
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 3.7e-95 352.1 207 76.3
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 3.7e-95 352.1 256 67.2
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.7e-95 352.1 260 66.5
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 8.2e-95 350.9 219 75.3
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.4e-94 350.1 232 72.4
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.4e-94 349.4 247 69.2
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 3.1e-94 349.0 230 72.6
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.1e-94 349.0 247 68.8
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.1e-94 349.0 196 81.6
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 9.1e-94 347.4 242 68.2
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 1.2e-93 347.1 246 68.3
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.5e-93 346.7 243 68.3
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.5e-93 346.7 255 65.9
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.5e-93 346.7 247 68.4
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.0e-93 346.3 252 67.9
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.0e-93 346.3 261 67.8
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.0e-93 346.3 233 72.1
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.6e-93 345.9 219 75.3
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 5.9e-93 344.7 211 77.3
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.2e-92 342.8 241 70.5
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.2e-92 342.8 255 68.2
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 5.0e-92 341.7 209 74.6
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 2.5e-91 339.3 252 67.1
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.5e-91 339.3 233 69.1
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 3.2e-91 339.0 219 72.6
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 7.2e-91 337.8 261 66.3
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.2e-91 337.8 261 66.3
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 7.2e-91 337.8 243 67.5
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 9.4e-91 337.4 256 66.8
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.6e-90 335.5 199 75.4
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 4.7e-90 335.1 211 76.3
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 4.7e-90 335.1 256 64.1
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 1.8e-89 333.2 210 74.3
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 3.9e-89 332.0 197 77.7
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 6.7e-89 331.3 235 68.9
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.1e-88 330.5 198 78.3
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 1.1e-88 330.5 229 69.4
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.1e-88 330.5 220 70.5
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.0e-88 329.7 231 69.3
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 5.7e-88 328.2 222 70.7
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 9.7e-88 327.4 225 67.6
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.3e-87 327.0 192 77.6
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 2.2e-87 326.2 197 74.1
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.8e-87 325.9 197 73.1
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 8.2e-87 324.3 220 70.0
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 1.1e-86 323.9 259 61.4
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.8e-86 323.2 216 68.1
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.1e-86 322.0 192 76.0
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.1e-86 322.0 225 67.6
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 9.1e-86 320.9 197 73.1
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 9.1e-86 320.9 197 73.6
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 1.2e-85 320.5 216 67.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.0e-84 317.4 241 63.5
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.0e-84 317.4 196 73.5
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.9e-84 315.8 206 69.9
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 3.8e-84 315.5 190 71.6
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 3.8e-84 315.5 219 64.4
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 6.5e-84 314.7 220 63.6
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.5e-83 313.5 220 64.1
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.5e-83 313.5 220 64.1
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 1.9e-83 313.2 190 70.5
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.9e-83 313.2 244 63.9
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 3.2e-83 312.4 190 70.5
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.2e-83 312.4 213 73.2
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.2e-82 310.5 221 66.1
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.1e-82 309.7 226 67.7
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 4.7e-82 308.5 209 70.8
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 6.1e-82 308.1 157 89.2
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 8.0e-82 307.8 204 72.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.4e-81 307.0 160 85.6
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 4.0e-81 305.4 197 72.1
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 8.8e-81 304.3 249 60.6
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.1e-80 303.9 205 70.7
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 2.8e-79 299.3 223 66.4
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 6.3e-79 298.1 167 80.2
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.1e-78 297.4 202 71.8
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 5.3e-78 295.0 161 80.7
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-76 290.0 261 60.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.2e-75 285.4 190 69.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 1.4e-73 280.4 158 81.0
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 5.2e-73 278.5 243 60.1
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 6.8e-73 278.1 256 55.1
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.9e-69 265.0 187 64.7
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.9e-67 260.0 209 59.8
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 8.8e-65 251.1 256 54.3
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 3.5e-61 239.2 236 45.8
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.5e-61 239.2 148 76.4
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.7e-55 219.2 140 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 3.2e-54 216.1 211 49.3
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 9.2e-54 214.5 130 73.1
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.8e-49 198.4 150 68.7
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 3.4e-48 196.1 102 86.3
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 5.8e-48 195.3 103 84.5
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.3e-39 167.5 108 69.4
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.9e-35 153.7 160 51.9
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 4.3e-35 152.5 94 74.5
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.6e-34 150.6 91 74.7
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-31 140.6 197 42.1
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.8e-31 139.4 101 66.3
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 6.9e-25 118.6 153 49.7
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 5.8e-24 115.5 198 35.9
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 5.8e-24 115.5 69 84.1
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.7e-23 114.0 159 37.7
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 7.8e-21 105.1 230 32.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.0e-17 92.8 53 77.4
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 7.6e-16 88.6 133 37.6
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.8e-15 86.3 92 52.2
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 6.4e-15 85.5 165 31.5
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 6.4e-15 85.5 163 39.3
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 8.4e-15 85.1 209 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 5.4e-14 82.4 120 34.2
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 3.0e-12 76.6 131 33.6
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 4.3e-11 72.8 136 36.0
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.6e-10 70.9 108 39.8
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 4.0e-09 66.2 37 75.7
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.5e-08 64.3 84 38.1
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 6.4e-07 58.9 110 30.0
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.1e-06 55.5 106 35.8


User provided reference genes

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