Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 2.2e-94 349.0 180 100.0
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.0e-79 299.3 181 84.5
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.0e-71 272.7 182 79.7
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 8.7e-67 257.3 180 76.1
Manes.13G109800 Manihot esculenta HOM05D005432 ORTHO05D004599 2.0e-50 203.0 185 62.2
Manes.12G116300 Manihot esculenta HOM05D005432 ORTHO05D004599 1.3e-49 200.3 184 62.0
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 1.8e-40 169.9 180 55.6
TAR628G1364 Trochodendron aralioides HOM05D005432 ORTHO05D004599 6.5e-38 161.4 174 54.6
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 8.0e-36 154.5 180 51.7
Ciclev10026545m.g Citrus clementina HOM05D005432 ORTHO05D004599 1.8e-35 153.3 179 53.1
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 3.0e-35 152.5 185 47.0
TAR625G0570 Trochodendron aralioides HOM05D005432 ORTHO05D004599 6.8e-35 151.4 173 51.4
TAR381G0486 Trochodendron aralioides HOM05D005432 ORTHO05D004599 8.8e-35 151.0 175 51.4
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.6e-34 149.4 185 47.0
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.4e-34 148.7 185 47.0
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 1.7e-33 146.7 160 53.8
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 3.7e-33 145.6 173 50.9
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 4.1e-32 142.1 187 45.5
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 9.1e-32 141.0 166 48.8
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 2.0e-31 139.8 182 47.8
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.0e-30 137.5 165 48.5
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 1.3e-30 137.1 166 47.6
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 2.3e-30 136.3 181 45.9
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.3e-30 136.3 181 45.9
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 2.3e-30 136.3 180 45.0
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 2.9e-30 136.0 179 45.8
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 8.6e-30 134.4 162 46.9
Atru.chr3.1044 Acer truncatum HOM05D005432 ORTHO05D004599 1.1e-29 134.0 174 51.1
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 1.9e-29 133.3 163 47.2
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 3.2e-29 132.5 159 45.9
Gohir.A11G048800 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.1e-28 129.8 168 47.0
Gorai.007G056800 Gossypium raimondii HOM05D005432 ORTHO05D004599 3.6e-28 129.0 168 47.0
Gohir.D11G052400 Gossypium hirsutum HOM05D005432 ORTHO05D004599 6.1e-28 128.3 168 47.0
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 6.8e-27 124.8 157 47.1
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 6.8e-27 124.8 196 44.9
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 8.8e-27 124.4 159 45.3
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.5e-26 123.6 165 51.5
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 9.8e-26 120.9 192 45.8
Prupe.6G218200 Prunus persica HOM05D005432 ORTHO05D004599 1.3e-25 120.6 195 46.2
COL.COLO4_11602 Corchorus olitorius HOM05D005432 ORTHO05D004599 1.7e-25 120.2 156 44.9
PGR102G0812 Punica granatum HOM05D005432 ORTHO05D004599 3.7e-25 119.0 179 48.6
CiPaw.01G002700 Carya illinoinensis HOM05D005432 ORTHO05D004599 4.9e-25 118.6 173 43.4
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.1e-24 117.5 200 39.0
CiPaw.02G001400 Carya illinoinensis HOM05D005432 ORTHO05D004599 1.8e-24 116.7 177 46.3
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.8e-24 116.7 194 42.3
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 3.1e-24 115.9 156 44.9
Hma1.2p1_0424F.1_g150570 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 3.5e-23 112.5 168 41.1
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 5.9e-23 111.7 195 40.5
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 2.3e-22 109.8 182 40.7
MBI16_g39101_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 1.9e-21 106.7 160 44.4
ClCG01G017720 Citrullus lanatus HOM05D005432 ORTHO05D004599 5.6e-21 105.1 157 43.9
Sed0012898 Sechium edule HOM05D005432 ORTHO05D004599 1.2e-20 104.0 156 41.7
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 2.1e-20 103.2 166 41.6
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 2.8e-20 102.8 175 39.4
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 2.8e-20 102.8 196 36.7
Nn5g30641 Nelumbo nucifera HOM05D005432 ORTHO05D004599 6.1e-20 101.7 179 43.0
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.1e-20 101.7 195 38.5
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.0e-19 100.9 190 40.5
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 2.3e-19 99.8 185 38.4
MELO3C007650.2 Cucumis melo HOM05D005432 ORTHO05D004599 4.0e-19 99.0 155 43.9
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 1.5e-18 97.1 89 55.1
Phvul.003G233700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 2.0e-18 96.7 184 38.6
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 2.6e-18 96.3 198 36.9
Cfa004151 Carpinus fangiana HOM05D005432 ORTHO05D004599 3.4e-18 95.9 184 38.0
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 3.4e-18 95.9 170 41.8
Rhsim08G0092400 Rhododendron simsii HOM05D005432 ORTHO05D004599 5.7e-18 95.1 169 39.1
Glyma.01G195300 Glycine max HOM05D005432 ORTHO05D004599 9.8e-18 94.4 181 39.2
Migut.L00424 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.3e-17 94.0 164 37.8
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.3e-17 94.0 195 35.4
Hma1.2p1_1085F.1_g255410 Hydrangea macrophylla HOM05D005432 ORTHO05D004599 2.2e-17 93.2 174 40.2
Lsat_1_v5_gn_4_160141 Lactuca sativa HOM05D005432 ORTHO05D004599 2.2e-17 93.2 190 38.4
Cpa.g.sc129.80 Carica papaya HOM05D005432 ORTHO05D004599 2.9e-17 92.8 173 43.4
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 3.7e-17 92.4 174 36.8
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.7e-17 92.4 199 37.2
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 4.9e-17 92.0 185 41.1
Haze_15264 Corylus avellana HOM05D005432 ORTHO05D004599 6.4e-17 91.7 163 39.3
Glyma.11G046400 Glycine max HOM05D005432 ORTHO05D004599 6.4e-17 91.7 191 38.2
MD02G1188700 Malus domestica HOM05D005432 ORTHO05D004599 6.4e-17 91.7 163 41.1
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 8.3e-17 91.3 210 34.8
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 1.1e-16 90.9 185 37.8
CsaV3_6G044250 Cucumis sativus L. HOM05D005432 ORTHO05D004599 1.4e-16 90.5 146 41.8
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 4.1e-16 89.0 211 33.2
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 5.4e-16 88.6 181 38.7
Migut.H00333 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.6e-15 87.0 155 39.4
Glyma.17G159600 Glycine max HOM05D005432 ORTHO05D004599 2.0e-15 86.7 186 38.2
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 5.9e-15 85.1 174 39.7
Phvul.002G009700 Phaseolus vulgaris HOM05D005432 ORTHO05D004599 7.8e-15 84.7 170 40.6
Eucgr.H02319 Eucalyptus grandis HOM05D005432 ORTHO05D004599 1.0e-14 84.3 136 44.1
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 2.3e-14 83.2 153 37.9
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 2.3e-14 83.2 179 37.4
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 3.0e-14 82.8 158 37.3
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 6.6e-14 81.6 156 38.5
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.1e-13 80.9 164 37.8
Lalb_Chr05g0225821 Lupinus albus HOM05D005432 ORTHO05D004599 4.3e-13 79.0 165 35.8
Nn6g34511 Nelumbo nucifera HOM05D005432 ORTHO05D004599 4.3e-13 79.0 145 39.3
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 5.6e-13 78.6 179 36.3
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.6e-12 77.0 186 35.5
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 4.7e-12 75.5 181 35.4
Medtr4g097350 Medicago truncatula HOM05D005432 ORTHO05D004599 4.7e-12 75.5 177 35.6
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 4.7e-12 75.5 189 34.9
Medtr4g097360 Medicago truncatula HOM05D005432 ORTHO05D004599 6.2e-12 75.1 161 37.9
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 8.0e-12 74.7 163 34.4
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.1e-11 74.3 182 33.0
Migut.L00423 Erythranthe guttata HOM05D005432 ORTHO05D004599 1.4e-11 73.9 152 34.2
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.8e-11 73.6 172 35.5
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 3.1e-11 72.8 161 34.2
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 3.1e-11 72.8 161 34.2
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 4.0e-11 72.4 158 32.9
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 5.2e-11 72.0 161 33.5
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 6.8e-11 71.6 87 44.8
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 1.2e-10 70.9 181 33.7
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 1.5e-10 70.5 57 59.6
Medtr4g097280 Medicago truncatula HOM05D005432 ORTHO05D004599 2.0e-10 70.1 173 35.8
arahy.Tifrunner.gnm1.ann1.6CR1D2 Arachis hypogaea HOM05D005432 ORTHO05D004599 2.6e-10 69.7 59 59.3
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 2.6e-10 69.7 170 34.7
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 2.6e-10 69.7 174 34.5
Aqoxy6G02535 Aquilegia oxysepala HOM05D005432 ORTHO05D004599 3.4e-10 69.3 176 34.7
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 4.4e-10 68.9 71 49.3
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 4.4e-10 68.9 157 33.8
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 4.4e-10 68.9 71 49.3
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 4.4e-10 68.9 157 33.8
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 4.4e-10 68.9 189 36.5
Psat4g081760 Pisum sativum HOM05D005432 ORTHO05D004599 5.8e-10 68.6 160 37.5
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 9.8e-10 67.8 71 49.3
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.3e-09 67.4 87 43.7
ECA232G0649 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.3e-09 67.4 172 34.3
Thhalv10000717m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 1.7e-09 67.0 169 32.0
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 2.2e-09 66.6 53 58.5
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 2.2e-09 66.6 54 59.3
Oeu021446.1 Olea europaea HOM05D005432 ORTHO05D004599 2.2e-09 66.6 166 33.1
THA.LOC104804211 Tarenaya hassleriana HOM05D009364 ORTHO05D004599 2.2e-09 66.6 54 57.4
TPR.G24220 Trifolium pratense HOM05D005432 ORTHO05D004599 2.2e-09 66.6 155 34.2
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 2.9e-09 66.2 54 59.3
arahy.Tifrunner.gnm1.ann1.0M6NCC Arachis hypogaea HOM05D005432 ORTHO05D004599 3.7e-09 65.9 47 63.8
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 3.7e-09 65.9 56 57.1
Medtr5g015190 Medicago truncatula HOM05D005432 ORTHO05D004599 3.7e-09 65.9 59 57.6
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 3.7e-09 65.9 170 32.4
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 4.9e-09 65.5 86 41.9
Psat2g172120 Pisum sativum HOM05D005432 ORTHO05D004599 6.4e-09 65.1 54 63.0
ECA232G3481 Erigeron canadensis HOM05D005432 ORTHO05D004599 1.1e-08 64.3 172 32.0
PSO541G2677 Papaver somniferum HOM05D005432 ORTHO05D004599 1.1e-08 64.3 72 50.0
TPR.G9336 Trifolium pratense HOM05D005432 ORTHO05D004599 1.1e-08 64.3 72 47.2
AUR62007532 Chenopodium quinoa HOM05D022777 ORTHO05D004599 1.4e-08 63.9 168 33.9
Psat4g081120 Pisum sativum HOM05D005432 ORTHO05D004599 1.4e-08 63.9 55 58.2
PGR004G1176 Punica granatum HOM05D005432 ORTHO05D004599 1.4e-08 63.9 179 33.0
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.9e-08 63.5 59 52.5
TPR.G24244 Trifolium pratense HOM05D005432 ORTHO05D004599 3.2e-08 62.8 169 34.3
CsaV3_2G016320 Cucumis sativus L. HOM05D005432 ORTHO05D004599 4.1e-08 62.4 58 56.9
Lalb_Chr16g0378951 Lupinus albus HOM05D005432 ORTHO05D004599 5.4e-08 62.0 68 52.9
MBI16_g16466_MAGBIO Magnolia biondii HOM05D005432 ORTHO05D004599 9.2e-08 61.2 78 48.7
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 1.2e-07 60.8 55 50.9
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 1.2e-07 60.8 55 50.9
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 1.2e-07 60.8 53 54.7
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 1.6e-07 60.5 64 48.4
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 2.0e-07 60.1 56 53.6
CARHR246100 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.7e-07 59.7 67 44.8
MELO3C020843.2 Cucumis melo HOM05D005432 ORTHO05D004599 3.5e-07 59.3 54 57.4
Aa31LG7G13930 Aethionema arabicum HOM05D009364 ORTHO05D004599 7.8e-07 58.2 68 45.6
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 1.3e-06 57.4 52 51.9
Thhalv10027223m.g Eutrema salsugineum HOM05D009364 ORTHO05D004599 1.3e-06 57.4 59 49.2
Os12g0635400 Oryza sativa ssp. japonica HOM05D028778 ORTHO05D030403 1.3e-06 57.4 54 50.0
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 1.7e-06 57.0 55 49.1
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 1.7e-06 57.0 55 49.1
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 1.7e-06 57.0 55 49.1
ClCG02G012170 Citrullus lanatus HOM05D005432 ORTHO05D004599 1.7e-06 57.0 61 52.5
CDE04G1981 Ceratophyllum demersum HOM05D005432 ORTHO05D004599 2.3e-06 56.6 156 35.9
Lsat_1_v5_gn_4_160281 Lactuca sativa HOM05D005432 ORTHO05D004599 8.6e-06 54.7 97 39.2


User provided reference genes

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