Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 4.8e-274 947.2 475 100.0
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.4e-257 892.5 476 95.0
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.3e-207 726.5 477 81.6
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.4e-204 715.7 477 81.1
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.5e-201 705.7 483 76.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 7.1e-201 704.1 478 77.8
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.5e-198 695.7 477 76.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 4.3e-198 694.9 480 76.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 6.9e-196 687.6 477 76.5
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 3.4e-195 685.3 477 75.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 7.6e-195 684.1 478 76.2
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.0e-194 683.7 477 75.3
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 2.2e-194 682.6 472 76.5
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.9e-194 682.2 477 75.1
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 6.5e-194 681.0 478 74.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.4e-193 679.9 484 73.8
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.8e-191 672.9 477 74.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.3e-191 672.5 477 73.8
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.5e-190 669.1 477 73.6
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-189 664.8 477 73.4
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.3e-188 661.4 477 73.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.6e-187 659.1 479 72.7
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.7e-187 657.5 477 73.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.7e-186 656.4 478 72.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.8e-186 655.2 477 72.7
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 6.5e-186 654.4 477 72.5
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.0e-183 647.1 477 71.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 3.0e-183 645.6 479 70.6
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 5.7e-182 641.3 477 71.3
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 4.8e-181 638.3 477 70.6
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.8e-180 636.3 477 71.3
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.6e-179 632.5 478 70.5
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 4.5e-179 631.7 459 73.6
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.0e-178 630.6 476 70.4
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.0e-178 630.6 478 70.3
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 3.2e-177 625.5 478 69.2
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.2e-176 623.6 478 69.2
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.7e-176 622.5 478 68.6
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.6e-176 622.1 472 70.6
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.4e-175 620.2 470 69.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.8e-175 619.8 510 65.5
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.9e-175 618.6 491 68.6
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 8.8e-175 617.5 478 68.4
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 5.7e-174 614.8 459 71.0
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 5.7e-174 614.8 477 68.8
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 5.7e-174 614.8 479 68.7
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 7.4e-174 614.4 477 68.8
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.3e-173 613.6 488 68.9
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.7e-173 613.2 479 68.3
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 4.8e-173 611.7 478 68.4
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 6.3e-173 611.3 474 69.6
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 5.3e-172 608.2 476 69.1
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 7.0e-172 607.8 471 69.2
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 7.7e-171 604.4 472 67.8
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 2.2e-170 602.8 471 67.1
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.2e-170 602.8 471 69.4
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.9e-170 602.4 477 69.0
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 5.0e-170 601.7 509 64.6
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.5e-169 600.1 478 68.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.5e-169 600.1 557 59.8
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.2e-169 599.0 471 67.5
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.2e-169 599.0 471 67.5
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 3.2e-169 599.0 480 66.0
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 4.2e-169 598.6 471 67.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 4.2e-169 598.6 467 67.7
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 4.2e-169 598.6 480 66.0
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 7.2e-169 597.8 480 65.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 9.4e-169 597.4 470 67.4
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.2e-168 597.0 475 67.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.1e-168 596.3 476 66.8
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.1e-168 594.7 480 65.2
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 8.0e-168 594.3 484 64.9
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.0e-167 594.0 479 67.8
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.8e-167 593.2 479 65.8
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 2.3e-167 592.8 472 65.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 2.3e-167 592.8 474 66.0
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.0e-167 592.4 468 69.2
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.0e-167 592.0 481 65.7
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.0e-167 592.0 471 67.1
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 6.7e-167 591.3 471 67.1
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-166 590.1 471 66.5
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.6e-166 589.3 449 69.7
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 3.3e-166 589.0 468 66.2
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.2e-165 586.3 474 67.3
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.8e-165 585.1 469 67.6
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 6.3e-165 584.7 472 67.6
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 8.2e-165 584.3 469 68.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.1e-164 582.0 471 66.0
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 7.0e-164 581.3 472 66.9
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 4.5e-163 578.6 472 66.9
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 7.7e-163 577.8 449 70.2
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 2.2e-162 576.2 476 64.9
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 8.5e-162 574.3 477 64.8
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 9.4e-161 570.9 472 66.3
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 9.4e-161 570.9 480 64.8
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-160 570.5 476 63.7
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.6e-160 570.1 469 66.3
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.6e-160 568.9 474 66.5
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.0e-159 567.4 470 65.1
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.4e-159 567.0 465 65.8
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 3.0e-159 565.8 465 65.8
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 5.2e-159 565.1 476 63.2
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 6.8e-159 564.7 476 63.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.2e-158 563.9 474 63.5
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.5e-158 563.5 476 63.7
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.0e-158 563.1 467 64.7
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 4.4e-158 562.0 470 66.8
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.2e-157 559.7 469 65.7
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 4.1e-156 555.4 468 64.5
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.0e-155 553.1 410 69.5
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.0e-154 550.8 441 69.2
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.1e-153 547.4 472 62.5
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.2e-152 543.9 469 63.8
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.7e-152 542.0 476 62.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.8e-151 540.0 471 65.6
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.3e-151 539.7 463 62.9
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.0e-151 539.3 471 65.2
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.8e-148 530.0 460 63.7
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 7.0e-148 528.1 519 57.0
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.9e-147 525.0 466 62.2
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 3.3e-145 519.2 412 67.5
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 1.4e-140 503.8 419 65.2
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.6e-138 495.0 454 58.6
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.8e-135 485.0 473 57.9
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-132 476.9 448 61.2
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 4.6e-131 472.2 476 58.8
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.8e-128 463.0 517 54.2
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.4e-126 455.7 428 60.7
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 5.8e-126 455.3 325 72.6
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.5e-121 440.7 347 67.1
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.3e-121 438.3 383 62.7
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.0e-118 430.3 453 53.6
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 4.9e-117 425.6 311 73.6
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 3.2e-116 422.9 501 50.7
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 8.6e-114 414.8 474 51.5
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.5e-110 404.1 473 50.7
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.1e-104 383.6 480 47.5
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.5e-94 349.4 300 63.7
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.0e-91 339.0 310 60.0
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.2e-83 314.7 340 55.9
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.3e-82 311.2 289 60.6
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 8.7e-82 308.5 489 41.3
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.9e-73 280.8 261 61.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 3.3e-73 280.0 228 65.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.4e-71 274.6 185 77.3
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 6.9e-71 272.3 215 68.8
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.3e-69 268.1 331 49.2
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.1e-67 260.8 234 61.5
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.5e-65 254.6 215 63.3
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 7.4e-65 252.3 548 36.5
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.8e-64 249.6 215 62.8
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 5.3e-63 246.1 238 60.5
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.0e-61 241.9 160 76.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.3e-58 230.7 218 54.6
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.1e-55 219.9 299 46.8
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.0e-49 201.1 124 79.8
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.6e-41 174.1 189 50.3
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 4.4e-41 173.3 317 38.2
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.3e-40 171.8 148 64.2
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 2.2e-40 171.0 364 34.6
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.5e-38 163.3 169 49.1
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.7e-37 161.4 148 59.5
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.2e-32 144.4 314 33.8
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.5e-28 131.0 173 44.5
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 4.3e-28 130.2 78 82.1
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 2.8e-27 127.5 154 53.2
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 5.2e-26 123.2 79 82.3
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 8.9e-26 122.5 128 60.9
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.3e-24 118.6 77 76.6
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 9.2e-23 112.5 129 55.8
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.9e-20 104.8 113 59.3
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.2e-14 85.5 90 55.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.8e-10 71.6 51 68.6
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 5.2e-10 70.1 64 57.8
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.4e-09 67.0 42 76.2
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 9.9e-09 65.9 112 45.5
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 2.9e-08 64.3 41 78.0
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.9e-07 61.6 41 70.7
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.4e-07 61.2 40 80.0
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 1.6e-06 58.5 74 47.3
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.1e-06 58.2 36 69.4
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 7.8e-06 56.2 116 46.6


User provided reference genes

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