Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0000900 Salix brachista HOM05D002875 ORTHO05D003215 3.4e-77 291.6 147 100.0
Sabra14G0001100 Salix brachista HOM05D002875 ORTHO05D003215 6.2e-71 270.8 141 97.2
Sabra14G0000200 Salix brachista HOM05D002875 ORTHO05D003215 3.9e-57 224.9 125 92.0
Sabra14G0000600 Salix brachista HOM05D002875 ORTHO05D003215 8.8e-57 223.8 115 98.3
Sabra14G0005500 Salix brachista HOM05D002875 ORTHO05D003215 2.9e-44 182.2 96 94.8
Sabra14G0002000 Salix brachista HOM05D002875 ORTHO05D003215 1.4e-30 136.7 74 94.6
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.0e-29 132.9 73 89.0
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 8.5e-28 127.5 73 86.3
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 1.2e-26 123.6 73 83.6
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 8.8e-25 117.5 77 74.0
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 5.7e-24 114.8 73 78.1
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 7.5e-24 114.4 71 77.5
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 7.5e-24 114.4 73 76.7
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 1.3e-23 113.6 71 76.1
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 2.2e-23 112.8 73 76.7
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 2.8e-23 112.5 70 75.7
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 3.7e-23 112.1 71 77.5
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 6.3e-23 111.3 73 78.1
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 6.3e-23 111.3 73 76.7
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 6.3e-23 111.3 72 75.0
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 8.3e-23 110.9 73 78.1
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 8.3e-23 110.9 73 74.0
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 8.3e-23 110.9 70 77.1
Hma1.2p1_0046F.1_g026650 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 1.4e-22 110.2 73 75.3
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 1.4e-22 110.2 73 75.3
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.8e-22 109.8 70 72.9
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.8e-22 109.8 70 72.9
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 1.8e-22 109.8 70 72.9
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 1.6e-21 106.7 73 74.0
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 1.6e-21 106.7 73 71.2
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 2.0e-21 106.3 73 71.2
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 2.0e-21 106.3 71 71.8
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 3.5e-21 105.5 73 69.9
Lj5A126T83 Lonicera japonica HOM05D002875 ORTHO05D003215 5.9e-21 104.8 87 60.9
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 7.7e-21 104.4 73 74.0
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 7.7e-21 104.4 73 69.9
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 7.7e-21 104.4 70 71.4
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 1.3e-20 103.6 73 69.9
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 1.7e-20 103.2 73 71.2
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.3e-20 102.8 73 69.9
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 2.9e-20 102.4 73 71.2
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 2.9e-20 102.4 72 70.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 3.8e-20 102.1 69 69.6
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 3.8e-20 102.1 73 69.9
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 3.8e-20 102.1 73 65.8
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 5.0e-20 101.7 73 65.8
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 6.6e-20 101.3 73 65.8
FAN08G3091 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.6e-20 101.3 73 68.5
FAN18G3563 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.6e-20 101.3 73 68.5
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 1.1e-19 100.5 73 68.5
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.5e-19 100.1 73 64.4
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 1.5e-19 100.1 73 67.1
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 1.9e-19 99.8 69 68.1
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 1.9e-19 99.8 73 67.1
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 1.9e-19 99.8 69 69.6
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 1.9e-19 99.8 73 65.8
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 2.5e-19 99.4 68 70.6
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 2.5e-19 99.4 71 66.2
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 2.5e-19 99.4 69 68.1
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 2.5e-19 99.4 73 64.4
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 3.3e-19 99.0 69 69.6
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 3.3e-19 99.0 69 69.6
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 3.3e-19 99.0 73 64.4
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 4.2e-19 98.6 69 68.1
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 5.5e-19 98.2 69 73.9
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 7.2e-19 97.8 73 63.0
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.2e-18 97.1 73 61.6
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 2.1e-18 96.3 70 65.7
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 2.1e-18 96.3 73 63.0
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 2.1e-18 96.3 73 60.3
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 2.1e-18 96.3 73 63.0
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 2.8e-18 95.9 73 64.4
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 3.6e-18 95.5 73 60.3
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 3.6e-18 95.5 69 68.1
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 3.6e-18 95.5 73 61.6
Nitab4.5_0003229g0110 Nicotiana tabacum HOM05D002875 ORTHO05D003215 3.6e-18 95.5 71 64.8
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 4.7e-18 95.1 68 67.6
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 4.7e-18 95.1 71 63.4
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 6.1e-18 94.7 73 60.3
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 6.1e-18 94.7 68 66.2
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 8.0e-18 94.4 71 63.4
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 1.0e-17 94.0 73 61.6
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 1.0e-17 94.0 140 41.4
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 1.4e-17 93.6 73 61.6
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 1.8e-17 93.2 69 66.7
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 1.8e-17 93.2 69 66.7
CAN.G1166.11 Capsicum annuum HOM05D002875 ORTHO05D003215 1.8e-17 93.2 70 61.4
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 1.8e-17 93.2 70 61.4
Ah.11g051480 Amaranthus hybridus HOM05D002875 ORTHO05D003215 2.3e-17 92.8 73 58.9
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 2.3e-17 92.8 70 58.6
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 2.3e-17 92.8 70 58.6
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 3.0e-17 92.4 71 64.8
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 5.2e-17 91.7 73 61.6
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 1.2e-16 90.5 73 60.3
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 1.2e-16 90.5 71 60.6
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 2.0e-16 89.7 70 57.1
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 2.0e-16 89.7 67 59.7
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 2.6e-16 89.4 70 57.1
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 4.4e-16 88.6 71 59.2
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 4.4e-16 88.6 70 58.6
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 1.7e-15 86.7 70 55.7
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 2.2e-15 86.3 73 60.3
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 2.2e-15 86.3 70 55.7
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 1.8e-14 83.2 73 57.5
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 1.8e-14 83.2 73 57.5
QL10p009041 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-13 80.5 75 57.3
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 2.0e-13 79.7 71 56.3
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 7.8e-13 77.8 73 54.8
Sabra14G0004900 Salix brachista HOM05D001027 ORTHO05D000844 7.8e-13 77.8 64 64.1
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 1.7e-12 76.6 75 56.0
QL10p010149 Quercus lobata HOM05D002875 ORTHO05D003215 1.9e-11 73.2 75 52.0
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 3.6e-10 68.9 138 38.4
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 1.8e-09 66.6 73 45.2
QL10p009146 Quercus lobata HOM05D002875 ORTHO05D003215 1.8e-09 66.6 69 52.2
QL10p010118 Quercus lobata HOM05D002875 ORTHO05D003215 4.0e-09 65.5 138 37.7
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-08 63.9 74 52.7
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.0e-08 63.2 66 50.0
QL10p008975 Quercus lobata HOM05D002875 ORTHO05D003215 2.6e-08 62.8 139 35.3
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 3.4e-08 62.4 77 44.2
QL10p010243 Quercus lobata HOM05D002875 ORTHO05D003215 7.5e-08 61.2 139 35.3
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 9.8e-08 60.8 140 35.7
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 9.8e-08 60.8 67 52.2
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.3e-07 60.5 134 31.3
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 1.3e-07 60.5 134 30.6
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 1.7e-07 60.1 66 47.0
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 3.7e-07 58.9 70 40.0
Cpa.g.sc76.34 Carica papaya HOM05D002875 ORTHO05D003215 4.9e-07 58.5 73 47.9
PSO063G4348 Papaver somniferum HOM05D002875 ORTHO05D003215 4.9e-07 58.5 50 56.0
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 4.9e-07 58.5 69 42.0
QL10p009307 Quercus lobata HOM05D002875 ORTHO05D003215 4.9e-07 58.5 67 50.7
SEGI_10049 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 6.4e-07 58.2 68 41.2
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 8.3e-07 57.8 67 43.3
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 8.3e-07 57.8 73 37.0
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 1.1e-06 57.4 70 41.4
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.1e-06 57.4 67 43.3
QL10p009356 Quercus lobata HOM05D002875 ORTHO05D003215 1.1e-06 57.4 141 36.2
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 1.1e-06 57.4 66 45.5
Duzib187G0424 Durio zibethinus HOM05D002875 ORTHO05D003215 1.4e-06 57.0 73 42.5
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 1.9e-06 56.6 66 42.4
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 2.4e-06 56.2 69 39.1
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 2.4e-06 56.2 73 38.4
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.4e-06 56.2 67 41.8
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.4e-06 56.2 66 43.9
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 2.4e-06 56.2 70 41.4
GSVIVG01033092001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.4e-06 56.2 61 45.9
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 3.2e-06 55.8 66 43.9
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 4.1e-06 55.5 66 42.4
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 5.4e-06 55.1 69 37.7
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 5.4e-06 55.1 70 38.6
PSO017G1731 Papaver somniferum HOM05D002875 ORTHO05D003215 7.0e-06 54.7 66 45.5
QL10p010194 Quercus lobata HOM05D002875 ORTHO05D003215 7.0e-06 54.7 74 44.6
CSS0013993 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 9.2e-06 54.3 70 40.0
CSS0041826 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 9.2e-06 54.3 70 40.0
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 9.2e-06 54.3 67 37.3


User provided reference genes

Program Settings