Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.4e-114 416.4 222 100.0
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.6e-110 401.4 222 91.0
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.0e-84 316.2 224 77.2
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 6.1e-78 294.7 164 87.8
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 2.4e-74 282.7 190 78.4
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 3.1e-74 282.3 164 84.8
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 2.0e-73 279.6 163 85.3
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 7.7e-73 277.7 164 82.9
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.5e-71 273.5 164 81.1
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.9e-71 273.1 155 85.2
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 3.2e-71 272.3 165 81.8
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 4.2e-71 271.9 155 84.5
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 2.1e-70 269.6 159 83.6
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 2.7e-70 269.2 164 78.0
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 4.7e-70 268.5 164 79.3
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 4.7e-70 268.5 159 82.4
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 4.7e-70 268.5 159 82.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 1.4e-69 266.9 197 69.5
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 4.0e-69 265.4 165 80.0
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 5.2e-69 265.0 162 79.0
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 6.8e-69 264.6 150 84.7
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 5.7e-68 261.5 172 77.3
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 7.5e-68 261.2 188 69.7
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.3e-67 260.4 160 76.9
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.7e-67 260.0 232 61.2
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 2.2e-67 259.6 160 78.8
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 2.8e-67 259.2 160 78.8
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 4.8e-67 258.5 164 79.3
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 4.8e-67 258.5 163 78.5
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 4.8e-67 258.5 165 77.6
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 8.3e-67 257.7 165 77.6
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.1e-66 257.3 225 62.7
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.4e-66 256.9 164 78.0
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.4e-66 256.9 154 81.8
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.4e-66 256.1 163 77.3
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.4e-66 256.1 165 76.4
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.4e-66 256.1 160 75.6
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.1e-66 255.8 159 76.7
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 5.4e-66 255.0 162 77.8
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 7.0e-66 254.6 195 67.2
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 9.1e-66 254.2 165 78.2
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 4.5e-65 251.9 141 84.4
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 4.5e-65 251.9 163 76.7
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 4.5e-65 251.9 165 76.4
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 4.5e-65 251.9 163 77.3
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 7.7e-65 251.1 160 74.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.9e-64 249.2 159 76.1
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.9e-64 249.2 163 75.5
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 2.9e-64 249.2 164 75.6
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 3.8e-64 248.8 150 78.7
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 8.5e-64 247.7 159 76.7
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 1.1e-63 247.3 166 74.7
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 3.2e-63 245.7 160 74.4
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 3.2e-63 245.7 149 79.2
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 5.5e-63 245.0 158 73.4
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 7.2e-63 244.6 192 65.6
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 1.2e-62 243.8 163 72.4
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.6e-62 243.4 158 77.2
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 8.0e-62 241.1 144 79.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 1.4e-61 240.4 157 73.9
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.4e-61 240.4 164 71.3
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.8e-61 240.0 164 70.1
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 1.8e-61 240.0 163 72.4
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.8e-61 240.0 163 72.4
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 2.3e-61 239.6 183 66.7
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 2.3e-61 239.6 196 65.8
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 3.0e-61 239.2 163 73.0
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 3.0e-61 239.2 154 75.3
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 3.0e-61 239.2 143 79.7
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.0e-61 238.8 196 65.8
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 4.0e-61 238.8 196 65.8
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 6.8e-61 238.0 161 71.4
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 6.8e-61 238.0 163 70.6
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 6.8e-61 238.0 161 71.4
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 6.8e-61 238.0 161 71.4
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 6.8e-61 238.0 163 70.6
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 8.8e-61 237.7 161 70.8
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 8.8e-61 237.7 153 74.5
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 8.8e-61 237.7 161 72.0
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.2e-60 237.3 164 70.7
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.6e-60 236.1 161 70.2
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 3.4e-60 235.7 161 70.8
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 5.7e-60 235.0 165 69.7
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.7e-60 235.0 135 81.5
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 5.7e-60 235.0 158 72.8
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 5.7e-60 235.0 161 71.4
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 7.5e-60 234.6 164 73.2
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 9.8e-60 234.2 164 70.1
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 9.8e-60 234.2 161 70.2
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.3e-59 233.8 159 72.3
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.2e-59 233.0 155 70.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 2.2e-59 233.0 155 75.5
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.8e-59 232.6 157 71.3
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 2.8e-59 232.6 163 68.7
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 4.9e-59 231.9 134 82.1
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 6.3e-59 231.5 133 82.7
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 4.1e-58 228.8 127 83.5
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 7.0e-58 228.0 132 80.3
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 9.2e-58 227.6 155 69.0
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 1.2e-57 227.3 158 72.2
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.6e-57 226.9 124 84.7
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 2.0e-57 226.5 155 74.8
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 3.5e-57 225.7 153 73.9
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 7.7e-57 224.6 132 78.8
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.0e-56 224.2 132 78.0
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.0e-56 224.2 132 78.0
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.0e-56 224.2 188 62.8
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 1.7e-56 223.4 150 71.3
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.0e-53 214.2 135 73.3
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 3.0e-53 212.6 139 76.3
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.5e-52 210.3 162 67.9
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 5.7e-52 208.4 128 77.3
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 1.7e-48 196.8 144 70.1
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 6.2e-46 188.3 129 66.7
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 8.0e-46 188.0 159 56.0
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 8.0e-46 188.0 150 59.3
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.8e-44 181.8 152 56.6
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.8e-44 181.8 152 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 2.2e-43 179.9 127 63.8
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.4e-42 177.2 149 58.4
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 1.2e-36 157.5 99 79.8
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.6e-36 156.4 102 75.5
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.4e-34 150.6 80 90.0
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 4.1e-34 149.1 78 92.3
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.7e-32 143.7 79 89.9
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 6.8e-29 131.7 122 57.4
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 1.4e-26 124.0 138 47.8
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 4.3e-23 112.5 120 47.5
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 1.2e-22 110.9 62 79.0
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 1.2e-20 104.4 141 41.1
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.9e-18 97.1 64 64.1
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 6.0e-17 92.0 49 83.7
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.0e-16 91.3 65 75.4
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.3e-15 86.3 60 68.3
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 4.0e-13 79.3 103 43.7
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 4.0e-13 79.3 56 75.0
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 2.6e-12 76.6 48 75.0
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 3.2e-10 69.7 45 66.7
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 1.0e-08 64.7 74 50.0
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 2.5e-07 60.1 33 81.8


User provided reference genes

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