Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 2219.9 1115 100.0
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1791.5 1075 85.5
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1479.5 1110 69.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1478.8 1077 71.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1474.1 1075 69.5
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1456.8 1077 69.4
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1455.7 1075 69.5
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1446.8 1115 66.8
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1439.5 1094 67.7
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1423.3 1075 67.6
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1418.7 1075 68.0
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1411.4 1075 67.8
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1406.3 1075 67.3
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1406.0 1075 67.4
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1406.0 1070 66.9
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1404.4 1075 67.2
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1403.3 1075 67.6
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1402.1 1075 67.1
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1401.0 1075 66.8
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1400.2 1081 66.8
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1394.4 1070 67.7
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1389.8 1076 67.4
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1381.3 1075 67.0
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1377.1 1076 65.5
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1368.2 1075 64.9
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1365.1 1075 65.3
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1363.2 1076 65.9
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1360.1 1076 66.0
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1346.3 1075 64.6
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1340.1 1091 63.0
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1329.7 1081 64.1
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1319.3 1081 63.7
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1314.7 1077 62.6
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1302.3 1096 61.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1302.0 1070 62.1
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1300.0 1075 62.2
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1299.3 1077 62.2
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1297.7 1076 62.4
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1295.8 1076 61.9
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1293.9 1095 60.9
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1292.7 1125 60.8
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1289.6 1076 61.6
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1287.3 1091 61.5
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1283.1 1096 61.7
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1282.7 1078 61.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1282.3 1095 61.0
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1275.8 1083 61.4
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1258.8 1076 61.1
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1257.7 1078 60.6
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1255.7 1075 61.9
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1254.2 1080 60.1
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1252.3 1077 60.0
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1244.2 1077 60.6
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1242.6 1081 60.5
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1241.1 1078 59.8
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1234.9 1077 60.2
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1231.1 1075 58.0
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1227.6 1077 59.6
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1226.5 1078 59.6
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1224.9 1075 58.7
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1224.5 1078 59.3
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1223.4 1077 59.3
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1223.4 1078 59.5
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1221.5 1077 59.3
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1218.4 1077 59.1
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1218.4 1077 59.1
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1215.7 1076 58.1
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1214.1 1076 58.9
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1206.0 1075 59.9
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1199.9 1079 57.6
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1199.5 1075 57.9
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1198.0 1087 58.2
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1194.1 1075 57.5
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1189.9 1070 58.7
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1189.1 1075 59.0
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1181.8 1083 58.7
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1166.0 865 69.9
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1162.9 1077 56.9
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1149.8 1075 55.8
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1140.9 1088 56.7
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1133.2 1075 55.3
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1119.8 865 68.3
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1085.5 880 64.4
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 3.7e-309 1065.1 1084 53.4
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 2.1e-296 1022.7 1080 50.9
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 2.4e-295 1019.2 1104 50.4
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 7.9e-283 977.6 780 64.1
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 8.4e-269 931.0 758 61.7
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 7.9e-267 924.5 687 67.8
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 4.5e-262 908.7 671 69.0
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.2e-252 875.5 1043 47.1
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.2e-235 820.8 768 54.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.7e-229 800.4 1088 43.1
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 3.6e-227 792.7 1093 43.1
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 8.0e-227 791.6 1047 43.4
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 1.8e-215 753.8 956 43.8
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 6.4e-200 702.2 1080 40.3
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 1.1e-199 701.4 535 67.1
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.1e-199 701.4 581 61.1
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 7.0e-199 698.7 621 58.9
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 8.3e-192 675.2 530 67.4
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 6.2e-187 659.1 428 77.8
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 2.0e-185 654.1 510 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.1e-175 621.7 1110 36.6
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.8e-174 615.5 643 52.7
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.3e-172 609.0 598 55.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 8.7e-165 585.5 1093 36.4
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 5.5e-159 566.2 498 58.0
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-154 552.0 617 51.2
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 3.0e-149 533.9 448 59.4
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 2.0e-145 521.2 1055 32.9
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.0e-144 518.8 498 54.4
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.9e-111 408.3 297 64.6
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.9e-111 408.3 523 45.1
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 4.2e-111 407.1 1179 27.5
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 6.8e-109 399.8 410 52.9
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 7.5e-108 396.4 339 63.4
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.1e-102 378.3 308 64.3
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.6e-96 356.3 308 62.7
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.1e-70 271.9 294 48.6
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 2.8e-70 271.6 533 34.9
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 2.0e-68 265.4 321 46.4
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.6e-68 263.5 295 48.5
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 8.4e-51 206.8 468 34.8
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 8.7e-48 196.8 109 86.2
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-44 186.4 387 34.4
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-44 186.0 387 34.1
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-40 172.6 333 36.0
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 2.3e-40 172.2 333 36.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 9.6e-39 166.8 234 43.6
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 9.6e-39 166.8 234 43.6
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 3.7e-38 164.9 772 24.2
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-37 162.2 318 35.2
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 3.1e-37 161.8 877 24.7
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.4e-34 152.9 170 50.6
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.7e-33 148.7 314 33.8
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.6e-30 139.4 333 29.7
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 1.5e-28 132.9 157 51.0
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-25 122.5 376 28.2
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.4e-23 114.0 73 74.0
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.8e-21 109.4 187 39.0
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 1.7e-19 102.8 55 87.3
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 3.8e-19 101.7 191 37.7
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.2e-17 96.7 60 78.3
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.6e-17 96.3 155 32.9
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 1.6e-17 96.3 89 51.7
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 2.2e-14 85.9 142 37.3
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-13 83.6 65 63.1
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 3.1e-13 82.0 46 82.6
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 3.4e-12 78.6 141 34.0
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 3.4e-12 78.6 429 23.1
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.8e-11 75.1 49 69.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.9e-10 72.8 74 52.7
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 1.0e-08 67.0 126 38.1


User provided reference genes

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