Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 2.7e-197 691.8 354 100.0
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 3.2e-182 641.7 354 92.1
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 8.4e-138 494.2 354 70.3
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 7.6e-115 417.9 354 59.9
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 1.4e-113 413.7 356 60.1
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 9.3e-113 411.0 354 59.3
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 1.2e-112 410.6 354 59.3
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 1.0e-111 407.5 343 59.5
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 1.3e-111 407.1 352 59.1
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 4.3e-110 402.1 355 57.5
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 3.1e-108 396.0 354 55.6
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 1.2e-107 394.0 351 57.5
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 1.3e-106 390.6 347 57.3
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 1.1e-105 387.5 347 58.5
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 3.2e-105 386.0 359 54.0
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 2.7e-104 382.9 349 57.9
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 4.6e-104 382.1 346 57.8
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 6.7e-103 378.3 361 54.6
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 3.3e-102 375.9 343 54.5
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 2.8e-101 372.9 364 53.0
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 2.4e-100 369.8 353 56.4
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 8.5e-98 361.3 334 55.7
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 1.3e-93 347.4 366 50.8
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 6.9e-92 341.7 360 51.4
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 1.0e-90 337.8 356 50.0
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 4.2e-89 332.4 331 54.1
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 1.2e-88 330.9 320 51.6
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 8.8e-87 324.7 345 49.0
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 2.8e-85 319.7 346 48.3
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 4.1e-84 315.8 351 47.6
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 5.3e-84 315.5 316 52.5
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 2.0e-83 313.5 354 46.9
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.3e-82 310.8 340 47.6
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 1.3e-82 310.8 342 51.2
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 2.2e-82 310.1 342 50.0
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 1.1e-81 307.8 344 49.7
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.9e-81 307.0 340 47.4
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.2e-81 306.2 343 47.2
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 4.2e-81 305.8 344 49.4
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 4.2e-81 305.8 306 51.3
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 2.7e-80 303.1 342 47.7
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.0e-79 301.2 338 46.7
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.4e-79 300.8 337 47.8
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 2.3e-79 300.1 366 46.4
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 8.8e-79 298.1 342 47.1
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 1.5e-78 297.4 347 49.6
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 1.5e-78 297.4 341 49.9
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 4.4e-78 295.8 348 47.4
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 4.4e-78 295.8 345 47.8
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 7.4e-78 295.0 322 50.0
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 2.8e-77 293.1 342 48.8
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 6.3e-77 292.0 346 49.1
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 1.4e-76 290.8 358 46.1
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 7.0e-76 288.5 339 49.3
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 5.9e-75 285.4 339 49.3
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 7.7e-75 285.0 348 44.5
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 1.7e-74 283.9 308 47.4
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 2.2e-74 283.5 353 46.2
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 2.9e-74 283.1 342 44.2
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 8.5e-74 281.6 347 43.2
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 2.5e-73 280.0 348 43.7
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.2e-73 279.6 362 44.5
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 4.2e-73 279.3 362 44.2
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 7.2e-73 278.5 352 45.2
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 2.1e-72 276.9 368 42.9
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.7e-72 276.6 361 44.9
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 2.7e-72 276.6 350 45.4
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 3.6e-72 276.2 346 47.1
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 4.7e-72 275.8 350 43.1
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 8.0e-72 275.0 348 45.4
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 1.4e-71 274.2 348 43.1
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 6.7e-71 271.9 360 46.4
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 6.7e-71 271.9 357 44.3
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 8.8e-71 271.6 360 46.1
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 1.2e-70 271.2 291 52.6
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 9.7e-70 268.1 320 44.1
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 2.2e-69 266.9 349 44.4
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 2.8e-69 266.5 320 46.2
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 1.4e-68 264.2 346 44.5
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 5.3e-68 262.3 357 42.9
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 3.5e-67 259.6 255 51.0
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 2.6e-62 243.4 309 41.1
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 2.8e-61 240.0 351 38.2
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 2.4e-60 236.9 299 41.8
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 2.3e-58 230.3 347 38.3
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 5.7e-54 215.7 351 36.8
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.9e-50 203.4 359 40.4
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 3.3e-49 199.9 240 44.6
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 3.3e-49 199.9 240 44.6
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.6e-48 196.4 355 37.7
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 9.5e-41 171.8 286 37.8
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 3.2e-36 156.8 339 30.7
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 2.3e-34 150.6 339 30.1
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 1.6e-32 144.4 231 38.5
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 2.1e-32 144.1 144 53.5
Duzib168G1669 Durio zibethinus HOM05D007205 ORTHO05D009175 2.0e-30 137.5 151 48.3
BcaB01g06014 Brassica carinata HOM05D007205 ORTHO05D009175 1.9e-28 131.0 261 39.1
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 2.7e-27 127.1 151 49.7
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 1.1e-25 121.7 151 48.3
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 6.2e-24 115.9 187 38.5
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 8.9e-23 112.1 200 36.0
Aa31LG5G24200 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.2e-20 103.6 122 44.3
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 7.8e-19 99.0 309 29.1
CAN.G86.39 Capsicum annuum HOM05D007205 ORTHO05D009175 1.4e-15 88.2 118 42.4
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.7e-13 81.3 304 26.0
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 2.2e-13 80.9 338 24.9
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.2e-13 80.9 317 27.1
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 2.2e-13 80.9 309 26.5
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 2.9e-13 80.5 312 25.6
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 8.4e-13 79.0 325 24.3
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 1.1e-12 78.6 313 25.6
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-12 77.4 313 25.9
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 3.2e-12 77.0 301 26.6
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 3.2e-12 77.0 314 26.8
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 5.4e-12 76.3 342 25.7
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 7.1e-12 75.9 295 25.4
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.3e-12 75.5 306 25.8
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.1e-11 74.3 306 25.5
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 2.1e-11 74.3 323 24.1
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 3.5e-11 73.6 334 24.3
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 4.6e-11 73.2 309 23.9
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 4.6e-11 73.2 296 26.0
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 6.0e-11 72.8 339 25.1
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 6.0e-11 72.8 338 25.7
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 7.8e-11 72.4 321 27.1
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 1.0e-10 72.0 340 25.6
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.3e-10 70.9 312 23.4
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.3e-10 70.9 312 23.4
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 3.0e-10 70.5 317 27.1
C03p03430 Brassica napus HOM05D007205 ORTHO05D009175 3.9e-10 70.1 69 50.7
BolC3t12884H Brassica oleracea HOM05D007205 ORTHO05D009175 3.9e-10 70.1 69 50.7
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 5.1e-10 69.7 357 24.9
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.1e-10 69.7 279 24.4
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 5.1e-10 69.7 310 24.5
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 8.7e-10 68.9 332 24.7
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 1.9e-09 67.8 314 26.1
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 2.5e-09 67.4 309 27.2
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 3.3e-09 67.0 310 25.8
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 7.3e-09 65.9 338 25.1
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 7.3e-09 65.9 278 23.0
Nn3g19189 Nelumbo nucifera HOM05D010623 ORTHO05D012718 7.3e-09 65.9 323 22.9
SGA_v2.0_scaffold21G09432 Striga asiatica HOM05D049040 ORTHO05D009175 2.4e-07 60.8 84 40.5
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 4.0e-07 60.1 172 27.3
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 4.0e-07 60.1 147 27.9
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 5.3e-07 59.7 125 31.2
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 6.9e-07 59.3 130 33.1
AUR62017790 Chenopodium quinoa HOM05D006072 ORTHO05D007363 9.0e-07 58.9 186 25.3
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.2e-06 58.5 108 31.5
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.5e-06 58.2 109 32.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 2.0e-06 57.8 97 35.1
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 2.0e-06 57.8 97 35.1
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 2.0e-06 57.8 147 29.9
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 2.6e-06 57.4 124 31.5
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-06 57.4 297 23.9
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 2.6e-06 57.4 102 29.4
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 3.4e-06 57.0 157 29.3
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 3.4e-06 57.0 97 34.0
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.4e-06 57.0 309 23.6
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 3.4e-06 57.0 119 28.6
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 3.4e-06 57.0 132 28.8
Cpa.g.sc72.34 Carica papaya HOM05D005305 ORTHO05D006394 4.5e-06 56.6 212 27.8
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 4.5e-06 56.6 308 25.0
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.5e-06 56.6 169 27.2
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 7.6e-06 55.8 156 24.4
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 9.9e-06 55.5 111 29.7
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 9.9e-06 55.5 135 28.9


User provided reference genes

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