Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 1.0e-87 326.6 161 100.0
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 3.0e-74 282.0 151 89.4
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 9.6e-65 250.4 148 79.1
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 5.2e-63 244.6 148 77.0
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 1.2e-62 243.4 148 77.7
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 1.7e-61 239.6 148 73.0
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 2.9e-61 238.8 148 72.3
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 2.9e-61 238.8 148 74.3
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 6.4e-61 237.7 148 74.3
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 6.4e-61 237.7 148 73.0
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 8.4e-61 237.3 148 74.3
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 8.4e-61 237.3 148 72.3
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 8.4e-61 237.3 148 71.6
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 1.1e-60 236.9 145 76.6
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 1.9e-60 236.1 150 73.3
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 3.2e-60 235.3 148 73.0
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 3.5e-59 231.9 148 73.6
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 4.6e-59 231.5 148 73.6
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 8.7e-58 227.3 147 70.7
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 4.3e-57 224.9 149 68.5
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 7.3e-57 224.2 135 75.6
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 9.6e-57 223.8 152 66.4
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 3.6e-56 221.9 150 70.7
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.8e-55 219.5 149 67.1
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 4.0e-55 218.4 147 68.7
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 5.3e-55 218.0 146 66.4
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 9.0e-55 217.2 147 67.3
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 3.8e-53 211.8 147 66.7
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 1.1e-52 210.3 144 67.4
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 2.4e-52 209.1 145 64.1
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 2.3e-50 202.6 147 66.0
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 3.9e-50 201.8 154 63.0
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 5.1e-50 201.4 148 64.2
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 1.9e-49 199.5 142 71.1
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 1.3e-48 196.8 147 59.9
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 2.8e-48 195.7 151 62.9
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 4.2e-44 181.8 151 61.6
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 1.1e-41 173.7 115 69.6
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 2.6e-38 162.5 101 73.3
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 4.5e-38 161.8 156 48.1
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 7.4e-33 144.4 91 72.5
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 4.5e-14 82.0 137 32.1
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 1.0e-13 80.9 145 33.8
MBI15_g00934_MAGBIO Magnolia biondii HOM05D000197 ORTHO05D000114 3.8e-13 79.0 144 31.9
Thhalv10008991m.g Eutrema salsugineum HOM05D000197 ORTHO05D000114 1.1e-12 77.4 144 32.6
Aa31LG7G7810 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.4e-12 77.0 144 31.9
SMO141G0292 Selaginella moellendorffii HOM05D000322 ORTHO05D010483 1.4e-12 77.0 145 29.0
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 1.9e-12 76.6 144 32.6
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 1.9e-12 76.6 144 31.9
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 3.2e-12 75.9 144 32.6
C07p20100 Brassica napus HOM05D000197 ORTHO05D000114 3.2e-12 75.9 144 32.6
BolC7t42531H Brassica oleracea HOM05D000197 ORTHO05D000114 3.2e-12 75.9 144 32.6
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 3.2e-12 75.9 144 32.6
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 4.2e-12 75.5 140 34.3
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 5.5e-12 75.1 144 30.6
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 7.2e-12 74.7 144 31.9
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 2.1e-11 73.2 144 30.6
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 2.1e-11 73.2 140 32.1
Hma1.2p1_1017F.1_g248290 Hydrangea macrophylla HOM05D000197 ORTHO05D000114 6.1e-11 71.6 144 30.6
Pp3c2_27350 Physcomitrium patens HOM05D012277 ORTHO05D010483 6.1e-11 71.6 140 30.7
Carub.0001s2344 Capsella rubella HOM05D000197 ORTHO05D000114 1.4e-10 70.5 144 29.9
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.4e-10 70.5 129 31.8
Ciclev10032973m.g Citrus clementina HOM05D000197 ORTHO05D000114 2.3e-10 69.7 148 33.1
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 2.3e-10 69.7 128 28.9
CARHR024320 Cardamine hirsuta HOM05D000197 ORTHO05D000114 3.0e-10 69.3 144 29.2
AagrBONN_evm.TU.Sc2ySwM_228.4478 Anthoceros agrestis HOM05D008409 ORTHO05D010483 3.9e-10 68.9 129 30.2
RcHm_v2.0_Chr4g0392581 Rosa chinensis HOM05D000197 ORTHO05D000114 6.7e-10 68.2 149 28.9
A08p28340 Brassica napus HOM05D000197 ORTHO05D000114 8.8e-10 67.8 126 30.2
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 8.8e-10 67.8 144 29.2
MD16G1024000 Malus domestica HOM05D000197 ORTHO05D000114 1.5e-09 67.0 157 27.4
AUR62009319 Chenopodium quinoa HOM05D000197 ORTHO05D000114 2.6e-09 66.2 147 27.9
MELO3C012016.2 Cucumis melo HOM05D000197 ORTHO05D000114 2.6e-09 66.2 144 31.2
PSO339G2973 Papaver somniferum HOM05D000197 ORTHO05D000114 2.6e-09 66.2 133 31.6
PSO384G3017 Papaver somniferum HOM05D000197 ORTHO05D000114 2.6e-09 66.2 131 32.1
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 2.6e-09 66.2 140 31.4
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 2.6e-09 66.2 140 31.4
Manes.15G130100 Manihot esculenta HOM05D000197 ORTHO05D000114 3.3e-09 65.9 150 26.7
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 4.4e-09 65.5 131 29.8
PSO782G5193 Papaver somniferum HOM05D000197 ORTHO05D000114 7.4e-09 64.7 162 29.6
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 7.4e-09 64.7 147 26.5
Lalb_Chr16g0382431 Lupinus albus HOM05D000197 ORTHO05D000114 9.7e-09 64.3 155 32.3
Mapoly0063s0024 Marchantia polymorpha HOM05D008409 ORTHO05D010032 9.7e-09 64.3 91 41.8
Eucgr.G02178 Eucalyptus grandis HOM05D000197 ORTHO05D000114 1.3e-08 63.9 155 26.5
PSO339G3956 Papaver somniferum HOM05D000197 ORTHO05D000114 1.3e-08 63.9 131 32.8
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 1.3e-08 63.9 142 26.8
COL.COLO4_13137 Corchorus olitorius HOM05D000197 ORTHO05D000114 2.2e-08 63.2 151 25.8
CiPaw.06G046600 Carya illinoinensis HOM05D000197 ORTHO05D000114 2.8e-08 62.8 142 31.0
CiPaw.06G047600 Carya illinoinensis HOM05D000197 ORTHO05D000114 2.8e-08 62.8 142 32.4
PSO063G1267 Papaver somniferum HOM05D000197 ORTHO05D000114 2.8e-08 62.8 160 29.4
PSO407G0401 Papaver somniferum HOM05D000197 ORTHO05D000114 2.8e-08 62.8 107 27.1
PSO384G1892 Papaver somniferum HOM05D000197 ORTHO05D000114 4.8e-08 62.0 131 32.1
Pp3c11_13210 Physcomitrium patens HOM05D012277 ORTHO05D010483 4.8e-08 62.0 129 29.5
BolC6t39555H Brassica oleracea HOM05D000197 ORTHO05D000114 6.3e-08 61.6 147 29.3
Dinv18606 Davidia involucrata HOM05D000197 ORTHO05D000114 6.3e-08 61.6 121 35.5
Dinv26222 Davidia involucrata HOM05D000197 ORTHO05D000114 6.3e-08 61.6 121 35.5
PSO063G5952 Papaver somniferum HOM05D000197 ORTHO05D000114 6.3e-08 61.6 155 27.7
PSO210G4090 Papaver somniferum HOM05D000798 ORTHO05D000659 6.3e-08 61.6 165 26.1
COL.COLO4_13138 Corchorus olitorius HOM05D000197 ORTHO05D000114 8.2e-08 61.2 151 25.2
RcHm_v2.0_Chr4g0392511 Rosa chinensis HOM05D000197 ORTHO05D000114 8.2e-08 61.2 149 27.5
PSO210G0179 Papaver somniferum HOM05D000197 ORTHO05D000114 1.1e-07 60.8 157 27.4
PSO210G0188 Papaver somniferum HOM05D000197 ORTHO05D000114 1.1e-07 60.8 157 27.4
RcHm_v2.0_Chr4g0392611 Rosa chinensis HOM05D000197 ORTHO05D000114 1.1e-07 60.8 142 29.6
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.4e-07 60.5 140 29.3
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.4e-07 60.5 140 29.3
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 1.4e-07 60.5 156 27.6
Aa31LG7G7110 Aethionema arabicum HOM05D000197 ORTHO05D000114 1.8e-07 60.1 65 44.6
BcaC07g39184 Brassica carinata HOM05D000197 ORTHO05D000114 1.8e-07 60.1 126 26.2
C08p21740 Brassica napus HOM05D000197 ORTHO05D000114 1.8e-07 60.1 126 26.2
BolC8t49812H Brassica oleracea HOM05D000197 ORTHO05D000114 1.8e-07 60.1 126 26.2
COL.COLO4_13148 Corchorus olitorius HOM05D000197 ORTHO05D000114 1.8e-07 60.1 150 23.3
DCAR_020417 Daucus carota HOM05D001593 ORTHO05D002007 1.8e-07 60.1 133 30.8
Sabra10G0081200 Salix brachista HOM05D000197 ORTHO05D000114 1.8e-07 60.1 130 29.2
AL1G36690 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 2.4e-07 59.7 132 26.5
BraA08t34765Z Brassica rapa HOM05D000197 ORTHO05D000114 2.4e-07 59.7 126 27.0
CiPaw.06G033500 Carya illinoinensis HOM05D000197 ORTHO05D000114 2.4e-07 59.7 131 31.3
AT1G70880 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 3.1e-07 59.3 152 29.6
CiPaw.05G192300 Carya illinoinensis HOM05D000197 ORTHO05D000114 3.1e-07 59.3 121 29.8
CiPaw.05G195100 Carya illinoinensis HOM05D000197 ORTHO05D000114 4.1e-07 58.9 121 28.9
Gorai.003G054200 Gossypium raimondii HOM05D001593 ORTHO05D002007 4.1e-07 58.9 128 31.2
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 4.1e-07 58.9 91 39.6
Oeu062656.1 Olea europaea HOM05D000197 ORTHO05D000114 4.1e-07 58.9 135 23.7
Gohir.A02G141900 Gossypium hirsutum HOM05D001593 ORTHO05D002007 5.3e-07 58.5 128 31.2
Gohir.D03G052300 Gossypium hirsutum HOM05D001593 ORTHO05D002007 7.0e-07 58.2 128 31.2
Gohir.D03G052700 Gossypium hirsutum HOM05D001593 ORTHO05D002007 7.0e-07 58.2 128 31.2
Gorai.003G054400 Gossypium raimondii HOM05D001593 ORTHO05D002007 7.0e-07 58.2 128 31.2
Sp1g20560 Schrenkiella parvula HOM05D000197 ORTHO05D000114 7.0e-07 58.2 126 26.2
AL2G30360 Arabidopsis lyrata HOM05D000197 ORTHO05D000114 9.1e-07 57.8 152 28.9
AT1G23120 Arabidopsis thaliana HOM05D000197 ORTHO05D000114 9.1e-07 57.8 134 25.4
CiPaw.05G192800 Carya illinoinensis HOM05D000197 ORTHO05D000114 1.2e-06 57.4 121 28.9
MELO3C021884.2 Cucumis melo HOM05D001593 ORTHO05D002007 1.2e-06 57.4 131 29.0
Hma1.2p1_2000F.1_g310590 Hydrangea macrophylla HOM05D001593 ORTHO05D002007 1.2e-06 57.4 132 36.4
Pp3c10_2750 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-06 57.4 120 30.8
Pp3c10_2760 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.2e-06 57.4 120 30.8
BcaB03g11923 Brassica carinata HOM05D000197 ORTHO05D000114 1.6e-06 57.0 126 25.4
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 2.0e-06 56.6 130 35.4
HanXRQChr13g0397881 Helianthus annuus HOM05D001593 ORTHO05D002007 2.0e-06 56.6 131 29.0
A07p37260 Brassica napus HOM05D000197 ORTHO05D000114 2.6e-06 56.2 150 27.3
BraA07t31286Z Brassica rapa HOM05D000197 ORTHO05D000114 2.6e-06 56.2 150 27.3
Haze_10961 Corylus avellana HOM05D000197 ORTHO05D000114 2.6e-06 56.2 153 26.1
DCAR_020416 Daucus carota HOM05D001593 ORTHO05D002007 2.6e-06 56.2 129 29.5
Haze_10956 Corylus avellana HOM05D000197 ORTHO05D000114 3.5e-06 55.8 135 30.4
Dinv26219 Davidia involucrata HOM05D000197 ORTHO05D000114 3.5e-06 55.8 126 32.5
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 3.5e-06 55.8 147 29.3
PSO210G1827 Papaver somniferum HOM05D000197 ORTHO05D000114 3.5e-06 55.8 157 24.8
COL.COLO4_13147 Corchorus olitorius HOM05D000197 ORTHO05D000114 4.5e-06 55.5 152 23.0
Dinv18605 Davidia involucrata HOM05D000197 ORTHO05D000114 4.5e-06 55.5 121 33.1
Dinv26221 Davidia involucrata HOM05D000197 ORTHO05D000114 4.5e-06 55.5 121 33.1
Peaxi162Scf00815g00012 Petunia axillaris HOM05D000197 ORTHO05D000114 4.5e-06 55.5 151 26.5
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 4.5e-06 55.5 154 26.0
Actinidia12371 Actinidia chinensis HOM05D000197 ORTHO05D000114 5.9e-06 55.1 148 28.4
ECA248G0523 Erigeron canadensis HOM05D001593 ORTHO05D002007 5.9e-06 55.1 124 32.3
Potri.010G111000 Populus trichocarpa HOM05D000197 ORTHO05D000114 5.9e-06 55.1 130 28.5
Hund01084 Selenicereus undatus HOM05D008409 ORTHO05D010483 5.9e-06 55.1 41 61.0
Aqoxy1G02445 Aquilegia oxysepala HOM05D001593 ORTHO05D002007 7.7e-06 54.7 123 26.0
Carub.0001s2264 Capsella rubella HOM05D000197 ORTHO05D000114 7.7e-06 54.7 132 23.5
Haze_10951 Corylus avellana HOM05D000197 ORTHO05D000114 7.7e-06 54.7 136 29.4
Gohir.D01G144100 Gossypium hirsutum HOM05D000197 ORTHO05D000114 7.7e-06 54.7 154 23.4
GSVIVG01011726001 Vitis vinifera HOM05D000197 ORTHO05D000114 7.7e-06 54.7 143 27.3


User provided reference genes

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