Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 0.0e+00 1078.2 591 100.0
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 3.9e-265 917.9 600 86.3
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.2e-236 822.4 615 75.4
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.2e-223 779.2 634 71.6
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 4.1e-137 492.7 602 52.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 5.9e-120 435.6 619 50.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 3.1e-113 413.3 628 48.6
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 2.7e-112 410.2 601 49.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.5e-112 409.8 601 49.8
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.3e-111 407.9 601 49.6
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.2e-107 394.8 610 51.5
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.4e-105 387.1 623 45.1
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.7e-101 373.6 588 45.6
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.0e-100 371.7 508 46.7
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.2e-99 368.2 514 49.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.5e-99 367.9 611 43.7
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 5.7e-99 365.9 634 44.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 7.0e-97 359.0 637 44.4
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.1e-94 351.7 521 46.6
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.9e-94 350.9 610 40.8
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 5.6e-94 349.4 587 42.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 7.3e-94 349.0 724 39.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.7e-93 346.3 514 44.0
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 2.6e-91 340.5 512 44.5
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 5.7e-91 339.3 651 39.8
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.3e-90 338.2 511 43.1
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 2.9e-90 337.0 706 40.4
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.1e-89 335.1 524 40.8
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.4e-89 334.7 568 43.8
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.2e-88 331.6 515 45.2
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 3.5e-88 330.1 655 40.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 5.9e-88 329.3 582 42.6
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.2e-85 321.6 641 41.0
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.8e-85 320.5 659 40.4
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 3.6e-85 320.1 660 40.8
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 4.7e-85 319.7 670 39.6
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 4.7e-85 319.7 632 42.4
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.0e-84 318.5 645 39.8
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.6e-83 313.9 645 40.9
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.4e-83 313.2 721 38.1
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.5e-83 312.4 615 37.1
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 9.8e-83 312.0 635 41.1
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.7e-82 311.2 609 40.7
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.2e-82 310.8 571 38.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.9e-82 309.7 581 41.8
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 8.3e-82 308.9 658 39.1
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.4e-81 307.4 589 39.9
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 2.4e-81 307.4 567 41.4
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 9.2e-81 305.4 590 41.0
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 7.8e-80 302.4 606 41.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.7e-79 301.2 586 41.3
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 3.9e-79 300.1 704 38.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.6e-79 299.3 513 40.5
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.5e-78 298.1 606 38.4
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 5.6e-78 296.2 558 43.5
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 9.5e-78 295.4 636 41.2
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.6e-77 294.7 675 37.2
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-77 294.7 651 38.7
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.1e-77 294.3 647 38.5
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 1.8e-76 291.2 631 36.1
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 5.2e-76 289.7 725 35.3
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 6.8e-76 289.3 635 36.4
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-74 285.0 660 38.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 4.1e-73 280.0 622 38.6
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 7.1e-73 279.3 508 41.3
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.2e-73 278.9 504 37.9
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.2e-72 278.5 627 35.4
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 7.8e-72 275.8 646 37.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.0e-71 273.9 559 38.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 6.6e-71 272.7 494 38.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 6.6e-71 272.7 633 34.9
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.6e-69 268.1 498 36.1
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.6e-69 268.1 638 37.3
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.1e-69 267.7 499 36.3
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 8.9e-68 262.3 672 35.6
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 3.4e-67 260.4 566 36.4
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 7.6e-67 259.2 425 41.9
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 9.9e-67 258.8 519 35.8
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 4.9e-66 256.5 615 37.1
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.4e-65 255.0 672 33.6
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.9e-65 254.6 534 34.8
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 4.1e-65 253.4 543 35.2
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.1e-65 253.4 633 35.5
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 4.1e-65 253.4 561 35.5
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 5.4e-65 253.1 633 35.5
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 7.1e-65 252.7 633 35.5
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 9.2e-65 252.3 759 31.4
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.1e-64 251.1 642 36.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 6.0e-64 249.6 497 39.8
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.8e-64 249.2 577 34.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.3e-63 248.4 801 33.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 3.9e-63 246.9 609 35.6
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 1.9e-62 244.6 380 40.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.6e-61 241.5 511 34.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.6e-61 241.5 377 45.4
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.7e-61 240.0 585 35.7
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.8e-60 238.0 640 32.3
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.1e-60 237.3 568 36.3
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 3.4e-59 233.8 494 38.5
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.7e-58 231.5 281 49.8
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 8.4e-58 229.2 505 38.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.5e-56 223.8 255 48.6
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 3.5e-56 223.8 597 34.2
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 8.7e-55 219.2 335 42.1
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.1e-53 214.5 641 35.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 6.9e-52 209.5 335 42.4
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.5e-51 208.4 650 34.2
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 5.6e-46 189.9 175 53.7
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 4.8e-45 186.8 646 33.7
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.1e-44 185.7 521 35.3
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.4e-44 185.3 168 53.0
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.8e-44 184.9 585 28.9
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 6.9e-44 183.0 526 30.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 3.5e-40 170.6 349 34.4
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 6.0e-40 169.9 619 28.8
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.5e-38 165.2 508 29.1
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.3e-37 162.2 215 40.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.4e-36 158.7 364 36.3
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.0e-35 154.8 245 39.6
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.0e-34 152.5 182 45.1
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 3.8e-34 150.6 143 53.8
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-31 142.1 151 52.3
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.2e-21 108.2 274 30.3
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 5.0e-18 97.1 230 32.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.2e-17 94.0 221 31.7
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.2e-16 92.4 144 45.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.1e-16 91.7 171 32.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 3.6e-16 90.9 214 30.8
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.4e-14 84.0 122 42.6
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.3e-13 82.4 201 29.9
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 4.5e-11 73.9 271 39.9
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 3.0e-07 61.2 62 51.6
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 5.2e-07 60.5 62 51.6
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 8.8e-07 59.7 88 40.9
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 4.4e-06 57.4 64 45.3
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.7e-06 57.0 103 39.8


User provided reference genes

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