Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 2.9e-103 378.6 203 100.0
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 7.1e-57 224.6 164 75.6
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 3.6e-45 185.7 167 66.5
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 3.5e-40 169.1 169 66.3
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.9e-39 165.6 164 62.8
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.4e-36 157.1 173 57.8
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 7.9e-32 141.4 175 55.4
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.8e-31 140.2 168 56.0
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.8e-31 140.2 172 52.3
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.0e-31 139.4 172 51.2
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 6.7e-31 138.3 184 50.5
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.5e-30 137.1 167 56.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.4e-28 129.8 141 54.6
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 3.1e-28 129.4 171 50.9
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 3.1e-28 129.4 170 51.2
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.3e-28 128.6 143 54.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.0e-27 126.7 168 48.2
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 1.7e-26 123.6 166 51.8
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.2e-26 123.2 156 56.4
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.2e-26 123.2 146 57.5
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 3.8e-26 122.5 175 48.6
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.0e-26 122.1 127 53.5
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.5e-26 121.7 127 53.5
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.5e-26 121.7 127 53.5
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.4e-25 120.6 171 50.3
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.5e-25 119.8 169 52.1
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 3.2e-25 119.4 111 56.8
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.6e-24 117.1 167 49.1
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 7.9e-24 114.8 173 51.4
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 7.9e-24 114.8 172 48.8
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 3.0e-23 112.8 181 47.5
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 6.7e-23 111.7 155 51.6
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 3.3e-22 109.4 174 48.9
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.3e-21 107.5 154 51.3
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.2e-21 106.7 139 51.8
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 2.2e-21 106.7 183 45.9
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.8e-21 106.3 177 49.7
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 1.1e-20 104.4 105 57.1
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.4e-20 103.2 190 42.1
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 3.1e-20 102.8 104 54.8
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 3.1e-20 102.8 182 43.4
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.1e-20 102.4 177 44.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.2e-19 100.9 120 49.2
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 1.2e-19 100.9 157 42.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.6e-19 99.8 138 48.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 5.9e-19 98.6 135 45.2
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 5.9e-19 98.6 171 43.9
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 7.7e-19 98.2 214 41.6
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.0e-18 97.8 161 44.1
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 3.8e-18 95.9 167 41.9
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 3.8e-18 95.9 147 44.2
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 8.5e-18 94.7 235 38.7
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.1e-17 94.4 181 47.5
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.1e-17 94.4 181 42.0
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 1.4e-17 94.0 185 39.5
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.2e-17 92.4 180 42.2
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 5.5e-17 92.0 175 44.0
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 9.4e-17 91.3 174 41.4
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 9.4e-17 91.3 150 44.7
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.2e-16 90.9 123 51.2
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.6e-16 90.5 124 43.5
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.1e-16 90.1 177 41.8
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 2.1e-16 90.1 170 47.1
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 3.6e-16 89.4 177 39.5
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.6e-16 89.0 82 64.6
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 4.6e-16 89.0 160 43.8
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 6.1e-16 88.6 195 44.1
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.0e-15 87.8 203 40.9
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.0e-15 87.8 159 42.8
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.4e-15 87.4 170 40.0
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 1.4e-15 87.4 115 51.3
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.8e-15 87.0 129 48.8
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.8e-15 87.0 166 41.0
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.0e-15 86.3 174 40.2
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.0e-15 86.3 112 50.0
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.9e-15 85.9 82 63.4
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 5.1e-15 85.5 112 41.1
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 5.1e-15 85.5 186 40.9
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 8.8e-15 84.7 207 38.2
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 1.5e-14 84.0 144 41.0
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 3.3e-14 82.8 165 41.8
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 4.3e-14 82.4 154 42.2
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 5.7e-14 82.0 173 42.2
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 7.4e-14 81.6 184 45.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 7.4e-14 81.6 184 45.7
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.4e-14 81.6 119 44.5
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 9.7e-14 81.3 165 40.0
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.3e-13 80.9 121 44.6
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-13 80.9 170 40.6
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 2.2e-13 80.1 87 60.9
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.8e-13 79.7 184 45.1
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 2.8e-13 79.7 179 38.5
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.8e-13 79.7 135 42.2
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 3.7e-13 79.3 182 41.2
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 3.7e-13 79.3 145 43.4
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 3.7e-13 79.3 119 43.7
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 4.8e-13 79.0 155 40.6
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 6.3e-13 78.6 148 42.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 6.3e-13 78.6 144 36.8
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.4e-12 77.4 190 38.4
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.4e-12 77.4 183 42.1
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.8e-12 77.0 146 42.5
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.8e-12 77.0 156 42.9
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 3.1e-12 76.3 162 37.0
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.1e-12 76.3 169 39.6
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.1e-12 76.3 174 40.8
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 4.1e-12 75.9 155 40.0
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 5.3e-12 75.5 181 38.1
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 5.3e-12 75.5 181 38.1
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 5.3e-12 75.5 149 43.0
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 6.9e-12 75.1 174 42.0
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 6.9e-12 75.1 139 43.9
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.0e-11 73.6 182 37.9
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.0e-11 73.6 124 41.1
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 2.6e-11 73.2 167 37.7
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.4e-11 72.8 149 41.6
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 5.9e-11 72.0 80 60.0
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 5.9e-11 72.0 139 42.4
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 7.7e-11 71.6 184 39.7
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 7.7e-11 71.6 184 39.7
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 7.7e-11 71.6 184 39.7
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 7.7e-11 71.6 180 36.1
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 1.0e-10 71.2 129 40.3
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.3e-10 70.9 139 41.0
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.2e-10 70.1 149 38.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 2.2e-10 70.1 155 42.6
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 5.0e-10 68.9 164 37.8
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 6.5e-10 68.6 176 38.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 8.5e-10 68.2 130 40.8
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.1e-09 67.8 160 36.9
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.1e-09 67.8 143 39.2
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.9e-09 67.0 139 40.3
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 3.2e-09 66.2 193 35.8
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 1.2e-08 64.3 148 35.8
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.6e-08 63.9 136 36.0
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.0e-07 61.2 121 42.1
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.4e-07 60.8 186 33.9
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.4e-07 60.8 139 39.6
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 1.8e-07 60.5 186 33.9
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 2.3e-07 60.1 109 45.9
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 2.3e-07 60.1 168 32.1
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 5.1e-07 58.9 168 32.1
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 5.7e-06 55.5 89 41.6
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 9.7e-06 54.7 94 35.1


User provided reference genes

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