Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.0e-48 194.9 100 100.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 5.4e-42 174.1 96 90.6
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 7.8e-33 143.7 96 77.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 6.6e-32 140.6 101 75.2
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.5e-28 129.4 79 79.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.0e-28 129.0 88 72.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.7e-27 125.9 85 75.3
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 4.9e-27 124.4 95 68.4
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 8.4e-27 123.6 74 79.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.1e-26 123.2 88 69.3
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.1e-26 123.2 80 73.8
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.9e-26 122.5 89 68.5
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.9e-26 122.5 84 76.2
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.4e-26 122.1 81 74.1
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.4e-26 122.1 82 73.2
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 2.4e-26 122.1 76 78.9
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 5.4e-26 120.9 85 70.6
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.4e-26 120.9 78 74.4
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 7.1e-26 120.6 83 72.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-25 119.8 84 72.6
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 1.2e-25 119.8 81 69.1
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.2e-25 119.8 76 76.3
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.6e-25 119.4 72 79.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.1e-25 119.0 83 73.5
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.1e-25 119.0 85 70.6
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.1e-25 119.0 80 72.5
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.7e-25 118.6 83 69.9
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.7e-25 118.6 83 69.9
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.7e-25 118.6 83 69.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 2.7e-25 118.6 85 69.4
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 3.5e-25 118.2 80 70.0
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 3.5e-25 118.2 82 67.1
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.0e-25 117.5 83 68.7
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 6.0e-25 117.5 72 77.8
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 6.0e-25 117.5 76 76.3
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 6.0e-25 117.5 79 73.4
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 7.8e-25 117.1 80 73.8
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.3e-24 116.3 78 76.9
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.7e-24 115.9 83 66.3
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.3e-24 115.5 94 69.1
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 2.3e-24 115.5 76 72.4
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 2.3e-24 115.5 89 70.8
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 2.3e-24 115.5 93 63.4
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.3e-24 115.5 83 68.7
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.3e-24 115.5 80 73.8
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 3.0e-24 115.2 85 69.4
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.0e-24 115.2 82 70.7
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 3.0e-24 115.2 82 69.5
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.9e-24 114.8 67 80.6
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.9e-24 114.8 82 70.7
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.9e-24 114.8 72 79.2
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.9e-24 114.8 87 70.1
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 5.1e-24 114.4 82 74.4
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 5.1e-24 114.4 79 75.9
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 6.6e-24 114.0 92 66.3
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 8.7e-24 113.6 95 67.4
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 8.7e-24 113.6 68 77.9
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 8.7e-24 113.6 68 77.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 8.7e-24 113.6 84 70.2
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.1e-23 113.2 78 71.8
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.1e-23 113.2 81 70.4
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-23 113.2 68 77.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.5e-23 112.8 93 64.5
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.9e-23 112.5 80 67.5
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.9e-23 112.5 72 75.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.5e-23 112.1 67 80.6
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 2.5e-23 112.1 78 71.8
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.3e-23 111.7 82 67.1
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 4.3e-23 111.3 77 67.5
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 4.3e-23 111.3 84 65.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 7.3e-23 110.5 94 63.8
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 9.6e-23 110.2 68 76.5
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 9.6e-23 110.2 78 70.5
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 9.6e-23 110.2 80 68.8
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 9.6e-23 110.2 76 71.1
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 9.6e-23 110.2 69 75.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 9.6e-23 110.2 91 60.4
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 9.6e-23 110.2 80 68.8
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 9.6e-23 110.2 78 70.5
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.3e-22 109.8 85 67.1
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.3e-22 109.8 76 69.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.3e-22 109.8 84 65.5
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.6e-22 109.4 72 70.8
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-22 109.4 75 72.0
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.6e-22 109.4 93 62.4
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.6e-22 109.4 75 72.0
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.6e-22 109.4 82 65.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-22 109.4 73 71.2
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.1e-22 109.0 79 69.6
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 2.8e-22 108.6 72 73.6
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 4.8e-22 107.8 73 72.6
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 4.8e-22 107.8 73 72.6
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 8.1e-22 107.1 68 75.0
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 8.1e-22 107.1 85 65.9
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.1e-21 106.7 66 77.3
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.4e-21 106.3 74 71.6
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.4e-21 106.3 87 65.5
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.8e-21 105.9 74 71.6
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.8e-21 105.9 74 70.3
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 2.4e-21 105.5 98 60.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.4e-21 105.5 77 67.5
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.1e-21 105.1 66 78.8
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 4.0e-21 104.8 65 76.9
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.3e-21 104.4 78 65.4
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.3e-21 104.4 70 72.9
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.2e-20 103.2 88 63.6
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 1.2e-20 103.2 88 61.4
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.2e-20 103.2 81 64.2
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.5e-20 102.8 78 67.9
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.5e-20 102.8 70 74.3
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.5e-20 102.8 76 68.4
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.0e-20 102.4 82 61.0
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 2.0e-20 102.4 73 67.1
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.0e-20 102.4 92 63.0
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 4.5e-20 101.3 67 73.1
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 9.9e-20 100.1 74 67.6
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-19 99.4 78 62.8
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.7e-19 99.4 78 62.8
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.7e-19 99.4 74 62.2
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.7e-19 99.4 61 73.8
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 6.4e-19 97.4 62 75.8
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 8.4e-19 97.1 82 62.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.1e-18 96.7 78 64.1
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.1e-18 96.7 78 64.1
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-18 96.3 66 66.7
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.9e-18 95.9 79 63.3
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.9e-18 95.9 79 63.3
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.9e-18 95.9 74 62.2
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 4.2e-18 94.7 79 62.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.2e-18 94.7 66 65.2
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 7.1e-18 94.0 68 66.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 7.1e-18 94.0 70 61.4
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 7.1e-18 94.0 58 74.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 7.1e-18 94.0 75 64.0
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 7.9e-17 90.5 77 61.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.7e-16 87.4 64 62.5
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.5e-15 86.3 62 64.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.5e-15 86.3 80 53.8
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-15 86.3 58 70.7
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-15 85.5 58 70.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.3e-15 84.7 68 61.8
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 7.4e-15 84.0 116 44.0
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.3e-14 83.2 83 53.0
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.6e-14 82.8 78 55.1
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 2.1e-14 82.4 63 61.9
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.8e-14 81.3 74 56.8
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 6.2e-14 80.9 64 56.2
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 6.2e-14 80.9 60 65.0
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.0e-12 75.9 52 69.2
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.5e-12 74.7 92 46.7
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.1e-10 70.1 49 69.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 7.1e-10 67.4 79 45.6
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 9.3e-10 67.0 39 79.5
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.9e-08 61.6 63 42.9
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 5.1e-08 61.2 34 79.4
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-06 56.2 43 65.1


User provided reference genes

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