Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.9e-180 635.2 337 100.0
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 3.0e-153 545.4 305 95.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.3e-151 537.7 350 85.7
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.6e-130 468.8 352 76.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.5e-123 446.0 400 65.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 3.9e-108 395.6 352 60.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.2e-106 390.6 342 62.9
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 5.2e-89 332.0 350 54.6
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 4.4e-88 328.9 354 58.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.4e-86 323.2 375 53.9
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.4e-86 323.2 357 53.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.1e-86 322.4 354 55.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.1e-86 322.4 364 53.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 4.1e-86 322.4 364 53.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.6e-85 320.5 356 56.7
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.5e-85 319.3 351 53.6
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 6.6e-84 315.1 367 55.6
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.6e-84 315.1 364 52.7
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.1e-83 314.3 346 56.6
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 5.6e-83 312.0 384 51.6
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-82 310.8 355 56.3
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.1e-82 310.1 337 54.3
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.1e-82 308.1 339 54.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.4e-81 306.6 339 54.6
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 4.0e-81 305.8 372 50.3
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.2e-81 305.4 339 54.9
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.3e-79 300.8 348 51.1
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 8.4e-79 298.1 341 52.2
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.4e-78 296.6 332 54.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.2e-77 294.3 346 55.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.6e-77 292.4 353 51.0
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 6.0e-77 292.0 366 54.1
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 7.8e-77 291.6 346 54.9
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 6.6e-76 288.5 390 45.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-75 287.7 390 44.6
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.9e-75 287.0 366 53.8
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.6e-75 285.4 337 48.7
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.8e-74 283.1 337 48.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.6e-74 282.7 349 47.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 6.2e-74 282.0 348 49.7
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.1e-74 281.6 348 48.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.1e-73 281.2 389 45.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.1e-73 279.6 371 47.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.5e-72 277.3 367 49.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.0e-72 276.9 339 47.8
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 5.8e-72 275.4 351 48.4
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.6e-72 275.0 350 47.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.3e-70 268.1 372 47.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.2e-69 267.7 397 45.3
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.1e-67 261.2 345 48.7
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.1e-67 261.2 367 45.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.5e-67 260.8 344 48.8
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 7.4e-67 258.5 361 49.3
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.6e-67 258.1 390 43.8
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-65 254.2 337 45.4
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.0e-65 252.7 342 46.2
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 5.3e-65 252.3 404 41.6
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 9.0e-65 251.5 361 47.9
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.6e-64 250.0 379 42.7
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 3.4e-64 249.6 339 46.0
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.9e-62 243.8 342 47.4
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.2e-62 243.0 327 44.6
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.9e-60 236.1 379 45.4
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-59 233.8 332 43.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.3e-58 231.1 339 44.2
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-58 230.7 370 45.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.3e-57 225.7 340 45.6
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.9e-57 225.3 340 42.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.5e-56 224.2 342 45.3
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 2.6e-56 223.4 363 43.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.9e-55 219.9 370 45.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.8e-55 219.5 349 39.3
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.5e-54 216.9 348 41.7
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 9.3e-54 214.9 335 42.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 4.6e-53 212.6 383 41.3
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.5e-51 206.8 302 44.0
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.5e-51 206.8 302 44.0
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.1e-50 203.8 331 40.2
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.8e-50 203.4 330 40.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-49 201.4 357 40.1
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.4e-49 200.3 331 39.6
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.1e-49 199.5 353 39.4
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-48 198.0 357 37.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 4.5e-48 196.1 352 39.5
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.0e-47 194.9 339 40.4
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 3.8e-47 193.0 330 38.5
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.8e-47 193.0 365 39.5
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.4e-47 191.8 335 38.5
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.4e-46 191.0 335 38.5
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.2e-46 189.5 335 38.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 7.2e-46 188.7 338 39.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.6e-45 187.6 338 38.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.1e-45 187.2 334 41.3
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-45 187.2 361 43.5
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 3.5e-45 186.4 350 38.9
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.6e-45 186.0 351 37.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.1e-45 185.7 331 38.4
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.0e-44 184.9 332 40.1
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.3e-44 184.5 131 71.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.9e-44 183.0 338 37.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 6.7e-44 182.2 327 43.7
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.8e-42 176.8 336 39.9
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.8e-42 176.8 333 40.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.3e-42 175.6 374 35.0
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 8.2e-42 175.3 331 39.0
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-41 174.9 331 39.0
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-41 174.9 331 39.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.4e-41 174.5 366 37.2
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.1e-41 172.9 329 37.7
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 9.0e-41 171.8 346 39.3
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.6e-40 170.2 339 39.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.9e-40 169.1 182 51.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.0e-39 168.3 338 37.3
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.7e-39 167.5 369 36.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.2e-39 167.2 332 37.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 6.5e-39 165.6 336 37.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.2e-38 163.3 453 30.9
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.5e-38 162.5 177 53.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.2e-37 161.4 317 37.5
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.6e-37 161.0 349 37.8
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.6e-37 161.0 316 38.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.7e-37 160.2 328 36.6
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.4e-36 157.9 331 36.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.8e-36 157.5 334 36.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 3.9e-36 156.4 117 69.2
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 5.1e-36 156.0 101 76.2
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.5e-35 154.5 100 77.0
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 4.3e-35 152.9 100 77.0
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.8e-34 150.2 110 66.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.1e-33 146.7 348 35.3
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 9.1e-33 145.2 332 34.6
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 9.1e-33 145.2 332 34.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 2.0e-32 144.1 155 52.3
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 2.0e-32 144.1 155 52.3
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.4e-32 143.3 162 51.9
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.0e-31 141.7 142 54.2
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.0e-31 141.7 370 33.8
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.0e-31 141.7 352 35.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.2e-31 140.6 441 32.4
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.2e-30 136.7 239 40.6
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 5.5e-30 136.0 243 40.7
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.5e-30 136.0 107 67.3
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 5.5e-30 136.0 121 57.0
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.7e-29 133.7 146 50.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.7e-29 133.7 146 50.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.7e-29 133.7 146 50.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.3e-27 126.7 118 56.8
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.4e-27 126.3 104 64.4
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 4.4e-27 126.3 104 64.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.3e-26 124.8 150 49.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.7e-26 124.4 153 52.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.7e-26 124.4 328 36.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.8e-26 123.6 166 47.0
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.1e-25 121.7 112 60.7
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 1.1e-25 121.7 98 68.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-25 121.3 335 31.6
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.3e-25 119.4 73 83.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.0e-25 119.0 187 37.4
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 9.1e-25 118.6 139 52.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.2e-24 118.2 153 41.2
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.3e-23 114.8 73 79.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.1e-22 111.7 110 57.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.1e-22 111.7 167 38.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.9e-22 110.9 144 50.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.5e-22 110.5 149 45.6
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 9.4e-22 108.6 330 27.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.4e-20 104.8 107 44.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 5.7e-19 99.4 284 32.7
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 7.0e-17 92.4 167 35.3
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.0e-15 88.6 340 27.6
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 8.5e-15 85.5 83 48.2
Sabra16G0296200 Salix brachista HOM05D003874 ORTHO05D349051 8.0e-13 79.0 112 46.4
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.2e-10 70.9 43 79.1
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 7.7e-08 62.4 108 40.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 3.2e-06 57.0 83 37.3
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.2e-06 57.0 70 37.1
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 4.2e-06 56.6 91 37.4
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.2e-06 55.8 67 41.8
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 9.5e-06 55.5 146 28.1


User provided reference genes

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