Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 4.5e-217 757.7 392 100.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.5e-153 545.4 305 95.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.9e-129 464.5 318 82.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.6e-110 403.7 307 73.9
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 2.6e-108 396.4 310 74.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 2.5e-90 336.7 320 57.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 5.2e-88 328.9 301 59.8
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.4e-69 266.9 319 52.0
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.9e-67 260.0 322 51.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.8e-67 259.6 332 48.8
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.8e-67 259.6 332 48.8
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.8e-67 259.6 313 49.8
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 6.5e-67 258.8 322 52.8
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.2e-65 254.6 325 48.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.8e-65 253.4 324 51.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.1e-65 252.3 332 47.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.8e-64 250.8 346 48.6
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 4.0e-64 249.6 319 48.0
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.5e-63 247.7 315 51.7
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 5.7e-63 245.7 323 51.4
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.2e-62 243.8 335 49.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.4e-61 241.1 300 49.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.0e-60 237.3 335 46.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.8e-60 235.3 322 50.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.0e-59 235.0 316 45.9
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.7e-59 234.2 302 49.0
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 5.0e-59 232.6 302 48.7
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.5e-58 231.1 302 49.0
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.3e-58 229.9 314 50.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.6e-58 229.2 322 49.7
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 2.1e-57 227.3 314 49.7
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.0e-56 224.9 321 49.8
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.0e-56 224.9 304 46.1
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.8e-56 224.2 358 40.2
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.0e-56 223.4 358 41.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.2e-56 222.6 305 44.3
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.2e-56 222.6 295 48.1
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-55 220.3 305 43.9
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.4e-55 219.9 332 44.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.8e-55 218.4 306 45.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-54 218.0 303 43.9
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-54 218.0 306 44.1
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.7e-54 216.5 339 43.7
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.8e-53 214.2 309 44.7
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.2e-53 213.4 329 42.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.0e-53 212.2 308 43.8
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.5e-52 209.9 302 44.4
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.5e-52 209.9 302 44.4
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.9e-52 209.1 307 42.0
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 7.8e-52 208.8 335 43.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.0e-51 208.4 308 45.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.9e-51 206.5 340 44.1
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.1e-50 204.9 309 44.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.1e-48 198.4 346 39.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-48 198.0 299 42.1
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 4.0e-48 196.4 329 44.7
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.0e-48 196.4 335 40.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.2e-47 194.9 362 38.7
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 9.8e-47 191.8 306 41.5
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 4.1e-45 186.4 298 42.6
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.2e-45 185.3 305 39.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 3.5e-44 183.3 288 40.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.5e-44 183.3 347 37.2
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.6e-44 183.0 317 37.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 6.0e-44 182.6 329 41.9
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.8e-44 182.2 346 41.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.9e-43 179.9 299 39.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.7e-41 172.9 302 39.4
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.1e-40 171.8 322 39.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.1e-40 170.2 307 41.0
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.2e-40 169.5 307 39.7
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.2e-40 169.5 309 41.1
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.6e-39 167.2 340 41.2
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.4e-39 166.4 311 37.9
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 5.8e-39 166.0 304 37.8
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.4e-37 161.4 287 36.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 9.2e-37 158.7 286 35.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-36 158.3 298 38.9
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.2e-36 158.3 340 40.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.6e-36 157.9 303 35.3
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 6.0e-36 156.0 101 76.2
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.7e-35 154.5 100 77.0
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 5.1e-35 152.9 100 77.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.5e-34 151.4 351 36.8
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.2e-33 148.3 287 35.2
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.2e-33 148.3 323 37.5
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.1e-33 147.5 336 36.0
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 3.6e-33 146.7 307 36.8
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 5.2e-32 142.9 321 34.3
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.8e-32 142.5 289 36.3
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.5e-31 141.4 299 35.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.0e-31 141.0 287 36.6
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.0e-31 141.0 287 36.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 2.6e-31 140.6 287 36.6
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.4e-31 140.2 288 37.5
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.3e-30 138.3 313 32.6
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.2e-30 137.5 323 35.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.1e-29 135.2 294 36.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.9e-29 134.4 294 36.1
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.2e-29 133.7 294 35.4
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.6e-28 131.3 325 34.2
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-28 131.3 306 34.6
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.6e-28 129.8 286 32.9
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.0e-28 129.4 302 33.8
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 7.8e-28 129.0 291 34.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 3.9e-27 126.7 320 33.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.1e-27 126.3 324 34.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 5.1e-27 126.3 295 35.9
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 5.1e-27 126.3 319 32.6
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.6e-27 125.6 342 31.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.1e-26 125.2 305 33.4
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.1e-26 125.2 306 35.9
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.3e-26 123.6 337 32.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.3e-26 123.6 302 33.4
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.3e-26 123.2 337 36.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 5.6e-26 122.9 302 35.4
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 1.2e-25 121.7 98 68.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.1e-25 120.9 286 36.4
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.8e-25 120.6 318 33.3
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 5.2e-24 116.3 295 37.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 6.9e-24 115.9 319 33.9
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 4.4e-23 113.2 294 35.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 9.9e-23 112.1 298 32.6
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 9.9e-23 112.1 138 46.4
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 9.9e-23 112.1 99 58.6
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.1e-21 108.6 301 31.2
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 4.2e-21 106.7 328 34.5
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 9.3e-21 105.5 107 50.5
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-20 105.1 284 34.2
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.1e-20 104.4 288 32.6
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.5e-20 103.6 288 32.6
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.6e-20 103.2 338 30.8
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.6e-20 103.2 300 31.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.7e-19 101.3 77 61.0
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-19 100.9 272 31.2
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-18 98.2 145 43.4
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 9.6e-18 95.5 123 45.5
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 9.6e-18 95.5 123 45.5
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.1e-17 94.4 130 44.6
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 2.1e-17 94.4 305 29.2
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.1e-17 94.4 110 48.2
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 2.1e-17 94.4 305 29.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 6.2e-17 92.8 85 58.8
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.4e-16 90.9 109 40.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 9.0e-16 89.0 132 42.4
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.0e-16 89.0 396 25.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 4.5e-15 86.7 213 33.8
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-13 82.0 70 60.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-13 82.0 70 60.0
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.1e-13 82.0 75 60.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.9e-13 81.3 290 24.8
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 4.2e-13 80.1 231 30.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 4.2e-13 80.1 231 30.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 4.2e-13 80.1 231 30.7
Sabra16G0296200 Salix brachista HOM05D003874 ORTHO05D349051 9.3e-13 79.0 112 46.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 2.7e-12 77.4 110 42.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.6e-12 76.6 79 50.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 6.0e-12 76.3 67 46.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 3.9e-11 73.6 121 46.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.1e-11 73.2 76 50.0
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.1e-10 72.0 79 51.9
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 7.4e-10 69.3 143 30.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 7.4e-10 69.3 106 42.5
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 9.0e-08 62.4 108 40.7
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.2e-07 62.0 77 46.8
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.5e-07 61.6 111 39.6
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.0e-07 61.2 116 34.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.6e-07 59.3 62 45.2
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 7.6e-07 59.3 137 30.7


User provided reference genes

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