Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0080600 Salix brachista HOM05D003267 ORTHO05D003955 1.1e-90 336.7 173 100.0
Sabra05G0013400 Salix brachista HOM05D003267 ORTHO05D003955 7.2e-42 174.5 103 91.3
Potri.005G000600 Populus trichocarpa HOM05D003267 ORTHO05D003955 3.0e-40 169.1 103 89.3
Manes.08G105800 Manihot esculenta HOM05D003267 ORTHO05D003955 1.5e-31 140.2 96 75.0
Potri.005G000300 Populus trichocarpa HOM05D003267 ORTHO05D003955 7.4e-31 137.9 100 78.0
Thecc.05G331700 Theobroma cacao HOM05D003267 ORTHO05D003955 6.3e-30 134.8 103 70.9
TWI12G0658 Tripterygium wilfordii HOM05D003267 ORTHO05D003955 1.4e-29 133.7 100 72.0
Atru.chr12.1498 Acer truncatum HOM05D003267 ORTHO05D003955 7.0e-29 131.3 103 69.9
TAR365G0992 Trochodendron aralioides HOM05D003267 ORTHO05D003955 2.0e-28 129.8 103 68.0
ClCG02G014560 Citrullus lanatus HOM05D003267 ORTHO05D003955 5.9e-28 128.3 100 71.0
COL.COLO4_05471 Corchorus olitorius HOM05D003267 ORTHO05D003955 5.9e-28 128.3 103 66.0
Duzib177G0095 Durio zibethinus HOM05D003267 ORTHO05D003955 5.9e-28 128.3 103 68.0
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.0e-27 127.5 102 65.7
Prupe.6G302000 Prunus persica HOM05D003267 ORTHO05D003955 1.3e-27 127.1 102 67.6
QL03p011428 Quercus lobata HOM05D003267 ORTHO05D003955 1.7e-27 126.7 100 69.0
Cc02_g36900 Coffea canephora HOM05D003267 ORTHO05D003955 2.2e-27 126.3 101 68.3
Haze_15005 Corylus avellana HOM05D003267 ORTHO05D003955 2.2e-27 126.3 103 65.0
MD12G1196900 Malus domestica HOM05D003267 ORTHO05D003955 3.8e-27 125.6 102 66.7
CANSAT54G1010 Cannabis sativa HOM05D003267 ORTHO05D003955 5.0e-27 125.2 103 66.0
Duzib128G1544 Durio zibethinus HOM05D003267 ORTHO05D003955 8.5e-27 124.4 103 67.0
Cfa004400 Carpinus fangiana HOM05D003267 ORTHO05D003955 1.1e-26 124.0 100 67.0
Ciclev10028530m.g Citrus clementina HOM05D003267 ORTHO05D003955 1.1e-26 124.0 103 66.0
MD04G1183500 Malus domestica HOM05D003267 ORTHO05D003955 2.5e-26 122.9 102 65.7
THA.LOC104818769 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 5.5e-26 121.7 103 63.1
Eucgr.H01351 Eucalyptus grandis HOM05D003267 ORTHO05D003955 1.2e-25 120.6 104 65.4
RcHm_v2.0_Chr3g0459061 Rosa chinensis HOM05D003267 ORTHO05D003955 1.2e-25 120.6 104 65.4
MBI18_g03886_MAGBIO Magnolia biondii HOM05D003267 ORTHO05D003955 2.1e-25 119.8 103 62.1
Cpa.g.sc19.30 Carica papaya HOM05D003267 ORTHO05D003955 3.6e-25 119.0 103 63.1
CsaV3_2G007450 Cucumis sativus L. HOM05D003267 ORTHO05D003955 4.7e-25 118.6 100 67.0
Sc23g0003840 Simmondsia chinensis HOM05D003267 ORTHO05D003955 4.7e-25 118.6 103 62.1
Gohir.A11G275900 Gossypium hirsutum HOM05D003267 ORTHO05D003955 8.0e-25 117.9 103 63.1
Gohir.D11G286300 Gossypium hirsutum HOM05D003267 ORTHO05D003955 8.0e-25 117.9 103 63.1
Gorai.007G309700 Gossypium raimondii HOM05D003267 ORTHO05D003955 8.0e-25 117.9 103 63.1
Hma1.2p1_0157F.1_g069480 Hydrangea macrophylla HOM05D003267 ORTHO05D003955 1.4e-24 117.1 98 64.3
Lalb_Chr07g0193041 Lupinus albus HOM05D003267 ORTHO05D003955 1.4e-24 117.1 103 61.2
MELO3C004140.2 Cucumis melo HOM05D003267 ORTHO05D003955 1.8e-24 116.7 103 63.1
GSVIVG01005282001 Vitis vinifera HOM05D003267 ORTHO05D003955 2.3e-24 116.3 96 64.6
FAN05G5115 Fragaria x ananassa HOM05D003267 ORTHO05D003955 6.7e-24 114.8 105 62.9
Nn4g25260 Nelumbo nucifera HOM05D003267 ORTHO05D003955 6.7e-24 114.8 96 64.6
Hma1.2p1_0052F.1_g030220 Hydrangea macrophylla HOM05D003267 ORTHO05D003955 8.8e-24 114.4 103 62.1
Psat0s4029g0080 Pisum sativum HOM05D003267 ORTHO05D003955 1.1e-23 114.0 102 60.8
Sed0022970 Sechium edule HOM05D003267 ORTHO05D003955 1.1e-23 114.0 100 66.0
Lj5g0007569 Lotus japonicus HOM05D003267 ORTHO05D003955 2.0e-23 113.2 103 60.2
Aqoxy5G02882 Aquilegia oxysepala HOM05D003267 ORTHO05D003955 3.3e-23 112.5 98 62.2
Lj5C313G5 Lonicera japonica HOM05D003267 ORTHO05D003955 3.3e-23 112.5 102 59.8
Rhsim11G0111200 Rhododendron simsii HOM05D003267 ORTHO05D003955 7.5e-23 111.3 92 63.0
AUR62003552 Chenopodium quinoa HOM05D003267 ORTHO05D003955 1.7e-22 110.2 102 55.9
AUR62017866 Chenopodium quinoa HOM05D003267 ORTHO05D003955 1.7e-22 110.2 101 56.4
Ca_09264_v3 Cicer arietinum L. HOM05D003267 ORTHO05D003955 2.8e-22 109.4 103 60.2
EL10Ac6g15325 Beta vulgaris HOM05D003267 ORTHO05D003955 3.7e-22 109.0 99 55.6
TPR.G8397 Trifolium pratense HOM05D003267 ORTHO05D003955 4.8e-22 108.6 103 58.3
CARHR080430 Cardamine hirsuta HOM05D003267 ORTHO05D003955 8.2e-22 107.8 96 61.5
Thhalv10020796m.g Eutrema salsugineum HOM05D003267 ORTHO05D003955 8.2e-22 107.8 95 61.1
Glyma.20G089700 Glycine max HOM05D003267 ORTHO05D003955 1.1e-21 107.5 103 58.3
THA.LOC104822291 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 1.1e-21 107.5 103 57.3
Ah.03g147760 Amaranthus hybridus HOM05D003267 ORTHO05D003955 1.4e-21 107.1 102 54.9
A05p42110 Brassica napus HOM05D003267 ORTHO05D003955 1.4e-21 107.1 96 58.3
BraA05t22929Z Brassica rapa HOM05D003267 ORTHO05D003955 1.4e-21 107.1 96 58.3
ATR0693G156 Amborella trichopoda HOM05D003267 ORTHO05D003955 1.8e-21 106.7 108 57.4
Eucgr.B01358 Eucalyptus grandis HOM05D003267 ORTHO05D003955 1.8e-21 106.7 104 60.6
Glyma.10G141000 Glycine max HOM05D003267 ORTHO05D003955 1.8e-21 106.7 103 58.3
MSTRG.5177 Avicennia marina HOM05D003267 ORTHO05D003955 2.4e-21 106.3 100 58.0
BcaC05g30076 Brassica carinata HOM05D003267 ORTHO05D003955 2.4e-21 106.3 96 58.3
C05p61320 Brassica napus HOM05D003267 ORTHO05D003955 2.4e-21 106.3 96 58.3
BolC5t34791H Brassica oleracea HOM05D003267 ORTHO05D003955 2.4e-21 106.3 96 58.3
CiPaw.02G000200 Carya illinoinensis HOM05D003267 ORTHO05D003955 2.4e-21 106.3 99 61.6
Sed0000167 Sechium edule HOM05D003267 ORTHO05D003955 3.1e-21 105.9 101 62.4
Medtr7g111160 Medicago truncatula HOM05D003267 ORTHO05D003955 4.1e-21 105.5 96 60.4
PSO210G5864 Papaver somniferum HOM05D003267 ORTHO05D003955 4.1e-21 105.5 98 63.3
PSO761G0395 Papaver somniferum HOM05D003267 ORTHO05D003955 4.1e-21 105.5 98 63.3
Aa31LG5G16380 Aethionema arabicum HOM05D003267 ORTHO05D003955 5.3e-21 105.1 96 59.4
AT3G05940 Arabidopsis thaliana HOM05D003267 ORTHO05D003955 7.0e-21 104.8 96 60.4
Nitab4.5_0004889g0020 Nicotiana tabacum HOM05D003267 ORTHO05D003955 7.0e-21 104.8 101 59.4
PGR031G3159 Punica granatum HOM05D003267 ORTHO05D003955 7.0e-21 104.8 102 59.8
Peaxi162Scf00071g00134 Petunia axillaris HOM05D003267 ORTHO05D003955 9.1e-21 104.4 102 57.8
THA.LOC104802767 Tarenaya hassleriana HOM05D003267 ORTHO05D003955 9.1e-21 104.4 104 58.7
CSS0001783 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 1.2e-20 104.0 102 55.9
CSS0029776 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 1.2e-20 104.0 102 55.9
Glyma.03G226700 Glycine max HOM05D003267 ORTHO05D003955 1.2e-20 104.0 103 55.3
Actinidia17726 Actinidia chinensis HOM05D003267 ORTHO05D003955 1.6e-20 103.6 102 58.8
Oeu033227.1 Olea europaea HOM05D003267 ORTHO05D003955 1.6e-20 103.6 106 59.4
FvH4_6g08800 Fragaria vesca HOM05D003267 ORTHO05D003955 2.0e-20 103.2 105 59.0
Lj1g0010587 Lotus japonicus HOM05D003267 ORTHO05D003955 2.0e-20 103.2 98 60.2
Carub.0006s2419 Capsella rubella HOM05D003267 ORTHO05D003955 3.5e-20 102.4 103 52.4
Nitab4.5_0004090g0130 Nicotiana tabacum HOM05D003267 ORTHO05D003955 4.5e-20 102.1 95 60.0
AL6G38390 Arabidopsis lyrata HOM05D003267 ORTHO05D003955 5.9e-20 101.7 103 52.4
AT5G26740 Arabidopsis thaliana HOM05D003267 ORTHO05D003955 5.9e-20 101.7 103 52.4
VMungo1383G0366 Vigna mungo HOM05D003267 ORTHO05D003955 5.9e-20 101.7 103 54.4
Carub.0003s0534 Capsella rubella HOM05D003267 ORTHO05D003955 7.7e-20 101.3 96 58.3
Sp3g04860 Schrenkiella parvula HOM05D003267 ORTHO05D003955 7.7e-20 101.3 96 59.4
AL3G16730 Arabidopsis lyrata HOM05D003267 ORTHO05D003955 1.0e-19 100.9 93 61.3
Hund12702 Selenicereus undatus HOM05D003267 ORTHO05D003955 1.0e-19 100.9 102 60.8
CARHR186990 Cardamine hirsuta HOM05D003267 ORTHO05D003955 1.3e-19 100.5 103 51.5
Sopen01g044920 Solanum pennellii HOM05D003267 ORTHO05D003955 1.3e-19 100.5 102 56.9
Solyc01g102480.3 Solanum lycopersicum HOM05D003267 ORTHO05D003955 1.7e-19 100.1 102 56.9
PGSC0003DMG400018231 Solanum tuberosum HOM05D003267 ORTHO05D003955 1.7e-19 100.1 102 56.9
Oeu002651.2 Olea europaea HOM05D003267 ORTHO05D003955 2.2e-19 99.8 96 58.3
Oeu061913.1 Olea europaea HOM05D003267 ORTHO05D003955 2.2e-19 99.8 102 53.9
Sp2g21400 Schrenkiella parvula HOM05D003267 ORTHO05D003955 2.2e-19 99.8 100 54.0
CSS0023239 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 2.9e-19 99.4 102 52.9
Lalb_Chr06g0167191 Lupinus albus HOM05D003267 ORTHO05D003955 2.9e-19 99.4 103 54.4
Phvul.007G207100 Phaseolus vulgaris HOM05D003267 ORTHO05D003955 2.9e-19 99.4 101 55.4
arahy.Tifrunner.gnm1.ann1.23D8N6 Arachis hypogaea HOM05D003267 ORTHO05D003955 5.0e-19 98.6 95 55.8
arahy.Tifrunner.gnm1.ann1.X07PWR Arachis hypogaea HOM05D003267 ORTHO05D003955 6.5e-19 98.2 95 55.8
CAN.G1379.38 Capsicum annuum HOM05D003267 ORTHO05D003955 6.5e-19 98.2 105 56.2
Thhalv10004284m.g Eutrema salsugineum HOM05D003267 ORTHO05D003955 6.5e-19 98.2 99 53.5
Lj9A239T58 Lonicera japonica HOM05D003267 ORTHO05D003955 6.5e-19 98.2 93 57.0
Migut.N00992 Erythranthe guttata HOM05D003267 ORTHO05D003955 1.5e-18 97.1 104 52.9
vmacro01648 Vaccinium macrocarpon HOM05D003267 ORTHO05D003955 1.5e-18 97.1 95 57.9
BcaB07g29962 Brassica carinata HOM05D003267 ORTHO05D003955 1.9e-18 96.7 100 52.0
A02p39360 Brassica napus HOM05D003267 ORTHO05D003955 1.9e-18 96.7 100 52.0
BraA02t08901Z Brassica rapa HOM05D003267 ORTHO05D003955 1.9e-18 96.7 100 52.0
Glyma.19G223700 Glycine max HOM05D003267 ORTHO05D003955 3.2e-18 95.9 103 55.3
BcaC03g17868 Brassica carinata HOM05D003267 ORTHO05D003955 4.2e-18 95.5 100 51.0
C02p59090 Brassica napus HOM05D003267 ORTHO05D003955 4.2e-18 95.5 100 51.0
BolC2t11964H Brassica oleracea HOM05D003267 ORTHO05D003955 4.2e-18 95.5 100 51.0
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 4.2e-18 95.5 105 58.1
CSS0009396 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D003955 5.5e-18 95.1 102 51.0
Actinidia22843 Actinidia chinensis HOM05D003267 ORTHO05D003955 1.6e-17 93.6 101 52.5
DCAR_029309 Daucus carota HOM05D003267 ORTHO05D003955 2.7e-17 92.8 103 53.4
Peaxi162Scf00194g00520 Petunia axillaris HOM05D003267 ORTHO05D003955 2.7e-17 92.8 94 55.3
MBI18_g28943_MAGBIO Magnolia biondii HOM05D003267 ORTHO05D003955 4.7e-17 92.0 109 47.7
Rhsim05G0116900 Rhododendron simsii HOM05D003267 ORTHO05D003955 4.7e-17 92.0 96 54.2
Rhsim05G0117100 Rhododendron simsii HOM05D003267 ORTHO05D003955 4.7e-17 92.0 96 54.2
Nitab4.5_0001093g0040 Nicotiana tabacum HOM05D003267 ORTHO05D003955 1.0e-16 90.9 95 54.7
MSTRG.27901 Avicennia marina HOM05D003267 ORTHO05D003955 1.8e-16 90.1 94 54.3
Dinv30962 Davidia involucrata HOM05D003267 ORTHO05D003955 4.0e-16 89.0 103 51.5
Actinidia01652 Actinidia chinensis HOM05D003267 ORTHO05D003955 5.2e-16 88.6 94 54.3
BcaNung03960 Brassica carinata HOM05D003267 ORTHO05D003955 1.2e-15 87.4 105 48.6
Nitab4.5_0000001g0310 Nicotiana tabacum HOM05D003267 ORTHO05D003955 1.5e-15 87.0 95 54.7
Hund04395 Selenicereus undatus HOM05D003267 ORTHO05D003955 4.4e-15 85.5 106 53.8
vmacro19805 Vaccinium macrocarpon HOM05D003267 ORTHO05D003955 4.4e-15 85.5 96 52.1
BraA06t26607Z Brassica rapa HOM05D003267 ORTHO05D003955 5.7e-15 85.1 99 51.5
ECA234G4544 Erigeron canadensis HOM05D006915 ORTHO05D003955 5.7e-15 85.1 88 53.4
Aa31LG11G10050 Aethionema arabicum HOM05D003267 ORTHO05D003955 7.5e-15 84.7 100 50.0
Migut.B00681 Erythranthe guttata HOM05D003267 ORTHO05D003955 9.8e-15 84.3 103 53.4
A06p36810 Brassica napus HOM05D003267 ORTHO05D003955 2.2e-14 83.2 99 50.5
DCAR_001878 Daucus carota HOM05D003267 ORTHO05D003955 2.2e-14 83.2 106 48.1
arahy.Tifrunner.gnm1.ann1.RKP3NC Arachis hypogaea HOM05D003267 ORTHO05D003955 2.8e-14 82.8 90 51.1
arahy.Tifrunner.gnm1.ann1.X4I5LU Arachis hypogaea HOM05D003267 ORTHO05D003955 2.8e-14 82.8 90 51.1
Phvul.001G220600 Phaseolus vulgaris HOM05D003267 ORTHO05D003955 3.7e-14 82.4 103 49.5
HPP92_010911 Vanilla planifolia HOM05D003267 ORTHO05D003955 4.8e-14 82.0 94 48.9
HPP92_010916 Vanilla planifolia HOM05D003267 ORTHO05D003955 4.8e-14 82.0 94 48.9
MSTRG.20347 Avicennia marina HOM05D003267 ORTHO05D003955 1.1e-13 80.9 102 48.0
BcaNung02822 Brassica carinata HOM05D003267 ORTHO05D003955 1.1e-13 80.9 98 50.0
C07p41680 Brassica napus HOM05D003267 ORTHO05D003955 1.1e-13 80.9 98 50.0
BolC7t44703H Brassica oleracea HOM05D003267 ORTHO05D003955 1.1e-13 80.9 98 50.0
SGA_v2.0_scaffold131G34450 Striga asiatica HOM05D003267 ORTHO05D003955 3.8e-11 72.4 89 48.3
CDE11G0971 Ceratophyllum demersum HOM05D003267 ORTHO05D003955 8.5e-11 71.2 101 47.5
SGA_v2.0_scaffold311G48247 Striga asiatica HOM05D003267 ORTHO05D003955 1.1e-10 70.9 97 46.4
DCAR_022330 Daucus carota HOM05D003267 ORTHO05D003955 1.9e-10 70.1 97 47.4
Lsat_1_v5_gn_5_101940 Lactuca sativa HOM05D003267 ORTHO05D003955 1.9e-10 70.1 106 45.3
Hund23017 Selenicereus undatus HOM05D003267 ORTHO05D003955 3.2e-10 69.3 98 48.0
Lsat_1_v5_gn_9_84121 Lactuca sativa HOM05D003267 ORTHO05D003955 5.5e-10 68.6 84 48.8
SHI18005 Sapria himalayana HOM05D003267 ORTHO05D003955 1.6e-09 67.0 97 47.4
HanXRQChr16g0518801 Helianthus annuus HOM05D003267 ORTHO05D003955 8.0e-09 64.7 85 47.1
DCAR_003255 Daucus carota HOM05D003267 ORTHO05D003955 1.0e-08 64.3 91 44.0
ECA236G4154 Erigeron canadensis HOM05D003267 ORTHO05D003955 3.0e-08 62.8 85 47.1
SEGI_26227 Sequoiadendron giganteum HOM05D003267 ORTHO05D003955 7.5e-07 58.2 85 42.4
HanXRQChr10g0293521 Helianthus annuus HOM05D003267 ORTHO05D003955 9.8e-07 57.8 110 38.2
Actinidia11705 Actinidia chinensis HOM05D003267 ORTHO05D003955 4.9e-06 55.5 48 62.5
Solyc01g102440.3 Solanum lycopersicum HOM05D003267 ORTHO05D021886 6.3e-06 55.1 82 41.5


User provided reference genes

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