Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 0.0e+00 1260.4 717 100.0
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.3e-282 974.9 724 81.8
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.7e-174 617.1 714 59.9
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 7.2e-80 302.8 702 37.7
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.0e-66 258.1 834 35.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 6.6e-57 226.5 824 34.0
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.0e-53 214.9 1015 31.4
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.4e-53 213.8 820 32.0
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 8.6e-49 199.5 769 30.9
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 4.3e-48 197.2 776 29.5
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 4.1e-43 180.6 835 30.3
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.5e-40 171.4 788 33.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.6e-39 167.5 733 31.0
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.1e-38 164.5 242 45.0
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.5e-37 162.2 845 34.2
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.5e-37 162.2 739 29.4
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 2.9e-36 157.9 275 42.5
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.9e-36 157.1 845 29.6
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 6.4e-36 156.8 565 34.5
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 6.4e-36 156.8 737 28.5
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.9e-35 155.2 728 28.7
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.4e-35 153.7 846 29.3
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.9e-32 145.2 808 26.7
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.3e-31 142.5 296 39.2
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.8e-31 141.4 269 46.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.4e-30 138.3 314 39.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 3.1e-30 137.9 454 32.6
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 5.8e-29 133.7 282 38.7
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 9.9e-29 132.9 278 39.9
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.3e-28 132.5 782 31.6
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.4e-27 129.0 800 28.0
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.4e-27 128.3 821 27.0
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-27 128.3 300 35.7
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 7.1e-27 126.7 739 27.1
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 2.7e-26 124.8 307 37.5
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 4.6e-26 124.0 742 26.7
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.0e-25 122.9 275 34.9
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-25 122.5 298 35.6
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.7e-25 122.1 242 46.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.7e-25 122.1 276 39.1
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.0e-25 121.3 263 38.0
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.0e-25 121.3 317 32.5
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.9e-25 120.9 482 30.9
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.9e-25 120.9 268 37.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 5.1e-25 120.6 296 44.9
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.6e-25 120.2 292 35.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.5e-24 119.0 747 28.2
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.5e-24 118.2 265 36.2
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 3.3e-24 117.9 732 26.9
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.3e-24 117.5 300 34.7
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 4.3e-24 117.5 222 42.8
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 4.3e-24 117.5 351 35.6
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 5.6e-24 117.1 777 30.5
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 5.6e-24 117.1 291 34.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.6e-23 115.5 751 26.5
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.1e-23 115.2 137 52.6
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 3.6e-23 114.4 332 34.3
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 8.1e-23 113.2 321 34.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.4e-22 112.5 315 32.4
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.8e-22 112.1 292 33.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.1e-22 111.3 265 36.6
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.1e-22 111.3 264 38.6
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.1e-22 111.3 296 34.5
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 4.0e-22 110.9 263 36.1
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.9e-22 110.2 285 33.7
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 9.0e-22 109.8 322 36.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-21 108.6 764 25.7
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 3.4e-21 107.8 451 34.4
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 7.6e-21 106.7 748 26.3
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 9.9e-21 106.3 320 38.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.3e-20 105.9 315 30.2
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 2.2e-20 105.1 748 25.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 2.2e-20 105.1 250 36.8
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.8e-20 104.4 258 32.9
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.8e-20 104.4 258 32.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.1e-19 102.8 309 32.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-19 102.8 261 34.5
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-19 102.8 261 34.5
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-19 102.8 261 34.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-19 101.7 756 26.1
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-19 101.7 125 50.4
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.4e-19 101.7 324 39.5
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 7.1e-19 100.1 250 34.0
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.2e-18 99.4 300 32.3
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.2e-18 99.4 308 30.5
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.6e-18 99.0 277 36.1
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.6e-18 99.0 313 32.9
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.1e-18 98.6 300 31.7
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.6e-18 97.4 330 31.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 6.0e-18 97.1 277 36.1
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 7.9e-18 96.7 221 37.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.0e-17 96.3 319 33.9
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.3e-17 95.9 290 33.4
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-17 95.1 276 35.9
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 3.9e-17 94.4 740 25.1
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 8.7e-17 93.2 124 52.4
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-16 92.4 161 41.0
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.5e-16 92.4 161 41.0
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.9e-16 92.0 271 33.9
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 5.6e-16 90.5 278 35.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 5.6e-16 90.5 142 47.2
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 5.6e-16 90.5 719 28.7
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 9.6e-16 89.7 341 30.5
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.1e-15 88.6 728 24.5
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.2e-15 87.0 837 26.6
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 8.1e-15 86.7 332 29.8
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.4e-14 85.1 289 29.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 4.0e-14 84.3 729 25.1
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 4.0e-14 84.3 242 31.8
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 4.0e-14 84.3 156 40.4
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.5e-13 82.4 280 30.4
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.5e-13 82.4 501 27.3
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 4.5e-13 80.9 483 29.0
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 5.8e-13 80.5 546 26.2
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 5.8e-13 80.5 522 26.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.6e-13 80.1 798 23.8
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.7e-12 79.0 294 29.9
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.7e-12 79.0 470 24.5
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 2.9e-12 78.2 240 31.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 3.8e-12 77.8 233 30.5
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 8.4e-12 76.6 146 37.7
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.4e-11 75.9 742 24.1
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 2.5e-11 75.1 154 39.6
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.5e-11 75.1 127 42.5
Duzib128G1713 Durio zibethinus HOM05D004299 ORTHO05D003557 2.5e-11 75.1 257 36.2
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.2e-11 74.7 228 30.3
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.2e-11 74.7 788 25.9
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.2e-10 72.8 125 40.8
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-10 72.8 788 25.5
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.6e-10 70.9 98 45.9
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 7.9e-10 70.1 644 25.0
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.8e-09 68.9 456 24.8
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.3e-09 68.6 293 31.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 8.7e-09 66.6 310 30.0
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 8.7e-09 66.6 299 27.4
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.5e-08 65.9 93 44.1
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.5e-08 65.9 167 32.9
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.9e-08 65.5 131 35.9
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 4.3e-08 64.3 148 34.5
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 4.3e-08 64.3 132 35.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 7.4e-08 63.5 289 29.1
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.4e-08 63.5 314 29.3
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 9.6e-08 63.2 133 36.8
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.6e-07 62.4 153 36.6
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 1.6e-07 62.4 51 58.8
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.1e-07 62.0 39 69.2
SEGI_05410 Sequoiadendron giganteum HOM05D027683 ORTHO05D018353 2.1e-07 62.0 94 42.6
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 2.1e-07 62.0 321 27.1
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 4.8e-07 60.8 59 52.5
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 6.3e-07 60.5 65 49.2
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 8.2e-07 60.1 78 41.0
SEGI_18962 Sequoiadendron giganteum HOM05D018884 ORTHO05D384929 8.2e-07 60.1 41 70.7
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.1e-06 59.7 45 57.8
Potri.001G323900 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.1e-06 59.7 49 63.3
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-06 59.3 37 70.3
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-06 59.3 37 70.3
QL09p025599 Quercus lobata HOM05D000002 ORTHO05D009077 1.4e-06 59.3 144 34.7
Ciclev10023587m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.8e-06 58.9 235 32.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.4e-06 58.5 132 34.1
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 2.4e-06 58.5 40 65.0
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.1e-06 58.2 44 61.4
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 4.1e-06 57.8 36 69.4
TWI60G1132 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 5.3e-06 57.4 236 28.4
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 6.9e-06 57.0 40 67.5
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 6.9e-06 57.0 38 68.4
SEGI_16647 Sequoiadendron giganteum HOM05D019055 ORTHO05D018353 9.0e-06 56.6 45 62.2


User provided reference genes

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