Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.2e-183 646.4 332 100.0
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 5.4e-179 630.9 330 97.9
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 3.3e-168 595.1 326 92.0
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.3e-168 595.1 325 93.2
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 5.6e-168 594.3 332 91.0
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 9.5e-168 593.6 326 91.7
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.1e-167 592.4 330 91.5
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 2.8e-167 592.0 330 91.2
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.0e-166 590.1 326 91.1
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.4e-166 589.7 330 91.2
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 8.9e-166 587.0 332 90.7
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.2e-165 586.6 327 90.8
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 3.4e-165 585.1 326 90.5
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 4.4e-165 584.7 332 89.5
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 9.8e-165 583.6 332 88.9
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.8e-165 583.6 327 91.1
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.2e-164 582.4 325 92.0
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 2.2e-164 582.4 325 92.0
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.9e-164 582.0 327 90.8
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 4.9e-164 581.3 330 89.1
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 4.9e-164 581.3 326 90.5
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 6.4e-164 580.9 326 90.5
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 7.0e-163 577.4 330 90.3
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 2.7e-162 575.5 326 89.6
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 4.6e-162 574.7 326 89.0
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.9e-161 571.6 328 88.4
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 6.6e-161 570.9 330 87.9
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 8.6e-161 570.5 328 88.1
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-160 569.7 330 86.7
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.3e-160 568.5 326 87.7
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 4.3e-160 568.2 330 87.6
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.3e-160 568.2 328 87.8
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 5.6e-160 567.8 330 86.7
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 7.3e-160 567.4 329 86.9
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 7.3e-160 567.4 330 87.3
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.2e-159 566.6 330 87.6
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.2e-159 566.6 326 87.7
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.8e-159 565.5 330 88.5
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.6e-159 565.1 330 85.2
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 3.6e-159 565.1 332 86.7
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 3.6e-159 565.1 326 88.0
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 6.2e-159 564.3 326 86.5
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.1e-158 563.5 328 85.7
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.1e-158 563.5 330 86.4
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.1e-158 563.5 326 87.7
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 1.4e-158 563.1 326 88.0
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.8e-158 562.8 330 84.8
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.3e-158 562.4 325 87.7
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 2.3e-158 562.4 330 84.5
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.1e-158 562.0 325 86.2
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 4.0e-158 561.6 363 82.4
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 5.2e-158 561.2 331 84.6
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 5.2e-158 561.2 330 84.5
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 6.8e-158 560.8 336 86.0
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.5e-157 559.7 330 85.2
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.5e-157 559.7 330 85.2
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.5e-157 559.7 380 78.2
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 2.0e-157 559.3 325 87.4
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 2.0e-157 559.3 325 87.4
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 3.4e-157 558.5 324 88.9
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.4e-157 558.5 330 84.8
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 7.5e-157 557.4 331 84.3
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 9.9e-157 557.0 330 84.5
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 9.9e-157 557.0 330 84.8
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.3e-156 556.6 326 85.6
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.3e-156 556.6 330 84.5
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.7e-156 556.2 330 85.8
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.7e-156 556.2 331 84.6
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.7e-156 556.2 329 86.3
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 2.2e-156 555.8 331 84.0
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 3.7e-156 555.1 326 85.3
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 4.9e-156 554.7 326 85.3
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.0
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.1e-155 553.5 326 85.0
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.4e-155 553.1 326 85.0
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.4e-155 553.1 326 85.0
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.4e-155 553.1 326 85.0
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.4e-155 553.1 326 85.0
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 1.9e-155 552.7 330 84.2
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 2.4e-155 552.4 330 83.9
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 9.2e-155 550.4 326 84.4
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 9.2e-155 550.4 326 84.7
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.2e-154 550.1 357 79.3
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 1.6e-154 549.7 332 83.4
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.3e-153 545.8 330 83.6
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.3e-153 545.8 330 83.3
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.9e-152 542.7 454 66.5
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 2.5e-152 542.3 314 86.0
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 4.3e-152 541.6 328 83.2
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 4.3e-152 541.6 327 83.2
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.2e-151 540.0 328 82.9
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 4.7e-151 538.1 326 83.1
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.3e-150 535.8 330 82.1
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.1e-150 535.4 330 82.1
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 8.4e-148 527.3 303 87.5
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 4.6e-146 521.5 327 82.0
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.5e-144 516.5 332 80.4
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 5.6e-144 514.6 326 81.9
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 7.3e-144 514.2 300 85.7
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 3.6e-143 511.9 330 82.4
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 4.0e-142 508.4 329 78.1
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 3.8e-140 501.9 330 78.2
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 5.1e-137 491.5 331 74.3
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 8.7e-137 490.7 330 79.1
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.8e-135 485.0 300 83.7
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.2e-135 484.6 376 69.9
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.1e-134 483.8 335 72.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.1e-134 482.3 331 77.3
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 3.4e-133 478.8 326 73.6
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 5.1e-129 464.9 331 74.6
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 9.6e-128 460.7 333 74.5
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.1e-127 459.5 279 82.8
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 2.6e-117 426.0 323 70.6
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.5e-114 415.6 234 88.9
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 2.8e-111 406.0 324 60.8
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.4e-110 402.9 318 63.5
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 7.6e-109 397.9 326 63.8
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-107 394.0 233 85.0
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 7.4e-104 381.3 318 65.1
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 5.3e-102 375.2 271 72.3
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 8.2e-95 351.3 197 90.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.1e-94 349.4 328 64.0
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 3.2e-91 339.3 227 76.2
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 8.0e-90 334.7 332 59.0
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 8.0e-90 334.7 239 69.9
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 9.7e-88 327.8 220 79.1
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 5.3e-86 322.0 220 77.3
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 6.1e-82 308.5 220 75.9
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.0e-81 307.8 167 91.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 6.5e-76 288.5 333 45.3
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 3.7e-71 272.7 163 85.9
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.7e-69 266.5 163 81.6
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.7e-68 263.8 326 51.2
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 4.0e-65 252.7 267 55.1
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.6e-61 240.7 130 92.3
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.5e-56 224.2 129 88.4
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 1.1e-43 181.4 159 62.9
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 7.3e-43 178.7 207 50.7
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-42 177.9 102 84.3
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 1.2e-40 171.4 205 52.2
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-38 164.9 103 83.5
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 3.0e-36 156.8 90 88.9
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 2.5e-35 153.7 87 83.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.6e-32 142.1 77 93.5
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.7e-31 141.0 88 77.3
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 1.9e-30 137.5 89 83.1
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 3.2e-30 136.7 74 89.2
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.1e-29 134.0 69 91.3
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 6.0e-29 132.5 80 80.0
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 7.3e-27 125.6 72 81.9
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 9.9e-24 115.2 75 74.7
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 2.2e-23 114.0 72 81.9
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 9.3e-22 108.6 69 78.3
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.2e-21 108.2 65 86.2
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 9.6e-19 98.6 60 86.7
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 3.3e-11 73.6 85 52.9
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 9.9e-08 62.0 48 66.7
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.9e-07 60.5 76 44.7


User provided reference genes

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