Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.1e-298 1029.2 516 100.0
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 4.3e-252 874.4 514 87.2
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.1e-198 696.0 513 69.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.0e-197 693.7 513 68.4
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 2.0e-196 689.5 513 68.4
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.5e-191 672.5 513 66.9
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 3.6e-190 668.7 513 67.4
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.1e-189 667.2 514 66.3
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 5.2e-189 664.8 513 67.6
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.6e-183 644.8 512 65.2
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.6e-182 643.3 516 64.0
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.6e-182 643.3 516 64.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 3.6e-182 642.1 517 65.0
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 5.2e-181 638.3 515 64.3
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.8e-181 637.9 516 63.4
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.5e-180 636.7 513 64.9
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 2.6e-180 636.0 515 65.2
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 3.7e-179 632.1 515 63.3
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 8.3e-179 630.9 513 63.2
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 7.1e-178 627.9 514 63.0
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 1.2e-177 627.1 515 64.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.5e-177 625.5 512 63.7
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.6e-177 625.2 513 62.4
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.3e-176 622.9 515 63.5
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 3.0e-176 622.5 513 62.0
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.1e-176 621.7 513 62.0
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 1.6e-174 616.7 512 63.1
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 6.2e-174 614.8 513 60.8
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 4.9e-171 605.1 516 60.1
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.2e-169 600.5 513 60.4
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.6e-169 600.1 513 61.2
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.9e-168 595.5 513 60.4
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.5e-167 592.8 514 58.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.3e-167 592.4 518 59.7
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 7.3e-167 591.3 510 60.4
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 9.6e-167 590.9 516 59.7
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 1.2e-166 590.5 516 60.1
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.4e-165 587.0 513 59.5
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 5.2e-165 585.1 514 59.5
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 3.4e-164 582.4 514 59.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.2e-163 579.7 513 55.9
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.9e-163 579.3 513 57.7
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 2.4e-162 576.2 513 57.1
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.6e-161 572.0 514 58.0
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 5.1e-160 568.5 514 58.6
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 6.6e-160 568.2 514 58.4
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 9.6e-159 564.3 548 55.3
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.3e-158 563.9 513 57.3
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.4e-157 560.5 514 55.3
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.4e-157 560.5 513 55.2
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 6.9e-157 558.1 514 59.1
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.0e-156 556.6 514 56.2
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 2.9e-155 552.7 515 57.1
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.8e-155 552.4 474 60.5
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 8.4e-155 551.2 513 55.6
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-154 550.8 506 57.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.9e-154 550.1 513 55.4
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 3.2e-154 549.3 513 55.8
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.2e-153 547.4 516 55.4
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 2.1e-153 546.6 515 57.1
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 2.7e-153 546.2 514 53.7
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 1.0e-152 544.3 515 56.1
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 3.0e-152 542.7 512 54.7
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.3e-150 537.3 514 53.3
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-150 536.6 515 52.8
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 3.7e-150 535.8 514 52.5
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 8.1e-150 534.6 513 56.3
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 2.4e-149 533.1 515 52.6
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 4.0e-149 532.3 515 52.6
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 4.0e-149 532.3 513 55.0
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.2e-148 530.8 516 52.3
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.5e-148 528.9 516 52.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 4.5e-148 528.9 513 54.6
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 5.8e-148 528.5 515 52.2
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.3e-147 527.3 516 51.9
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 4.9e-147 525.4 516 52.9
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 6.4e-147 525.0 512 53.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 6.4e-147 525.0 514 52.7
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.1e-146 524.2 512 54.7
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.1e-146 524.2 515 52.6
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.9e-146 523.5 512 52.9
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 3.2e-146 522.7 515 52.0
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 7.1e-146 521.5 514 52.3
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.8e-144 516.9 515 51.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 6.7e-144 515.0 517 52.4
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 9.0e-141 504.6 493 55.0
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 4.5e-140 502.3 516 51.9
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 4.9e-139 498.8 516 49.8
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.5e-138 496.5 513 50.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.6e-137 493.8 516 51.7
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 6.0e-137 491.9 472 54.4
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.7e-134 482.6 516 49.0
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.1e-133 481.1 474 52.5
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.1e-133 479.2 516 48.8
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 5.9e-132 475.3 514 48.8
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.4e-128 464.2 482 54.4
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.7e-126 457.2 516 47.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.8e-126 455.7 514 48.4
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.3e-120 436.8 507 46.7
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 4.4e-119 432.6 505 46.9
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 9.7e-119 431.4 500 46.4
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.4e-114 417.5 517 43.3
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 9.4e-114 414.8 543 42.5
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.5e-106 390.2 515 42.9
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.0e-95 354.0 348 52.9
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.7e-94 350.9 282 62.1
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 5.4e-93 345.9 420 45.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 5.4e-93 345.9 420 45.0
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 2.1e-89 334.0 473 37.6
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 6.8e-88 328.9 515 39.4
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 8.6e-83 312.0 581 35.3
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.8e-81 307.0 519 35.1
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.0e-80 305.1 544 34.2
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.6e-66 256.1 375 42.9
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 2.6e-63 247.3 554 31.6
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.9e-58 231.1 549 29.9
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 5.3e-48 196.4 192 55.2
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.9e-43 180.3 166 55.4
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 7.3e-42 176.0 397 30.5
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 9.6e-42 175.6 162 53.1
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.6e-41 173.7 162 52.5
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 4.8e-41 173.3 117 70.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 3.1e-40 170.6 124 67.7
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.2e-36 158.7 124 58.1
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.2e-36 158.7 124 58.1
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 7.9e-36 156.0 121 58.7
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.4e-30 136.0 105 59.0
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.1e-28 131.3 433 25.2
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.5e-26 125.2 281 30.2
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 5.7e-26 123.2 404 22.8
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 7.4e-26 122.9 269 34.2
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.2e-23 115.5 319 27.6
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 4.6e-20 103.6 121 43.8
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 2.2e-14 84.7 85 49.4
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 3.8e-14 84.0 67 58.2
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.0e-14 83.6 69 56.5
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.1e-13 82.4 170 34.1
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 8.8e-11 72.8 73 47.9
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.8e-09 67.0 39 76.9
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 8.2e-09 66.2 45 68.9
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 9.1e-08 62.8 40 67.5


User provided reference genes

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