Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.2e-135 486.5 250 100.0
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.9e-64 250.0 143 90.2
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 5.9e-53 211.8 148 76.4
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 5.0e-44 182.2 146 67.1
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.1e-43 181.0 149 65.8
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.2e-42 177.6 144 66.0
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.6e-42 177.2 146 65.1
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 4.6e-42 175.6 148 70.3
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 6.1e-42 175.3 146 67.1
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 3.3e-40 169.5 146 69.9
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 9.7e-40 167.9 106 80.2
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 2.8e-39 166.4 151 61.6
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 5.3e-38 162.2 145 62.8
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.9e-37 158.7 140 63.6
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 2.2e-36 156.8 211 51.7
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.9e-36 156.4 106 74.5
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 2.9e-36 156.4 139 59.7
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.9e-36 156.4 143 60.1
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 5.0e-36 155.6 145 62.8
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 8.5e-36 154.8 146 58.9
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.1e-35 154.5 104 75.0
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 2.5e-35 153.3 144 59.7
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 2.5e-35 153.3 92 83.7
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.2e-35 152.9 102 75.5
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 4.2e-35 152.5 142 62.7
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 5.5e-35 152.1 142 61.3
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 7.2e-35 151.8 151 57.6
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 7.2e-35 151.8 101 76.2
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.2e-35 151.8 149 59.7
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 7.2e-35 151.8 136 60.3
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 9.4e-35 151.4 101 75.2
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.4e-35 151.4 149 59.7
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.6e-34 150.6 145 59.3
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 1.6e-34 150.6 101 75.2
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 1.0e-33 147.9 84 83.3
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.0e-33 147.9 146 62.3
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.4e-33 147.5 147 55.1
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.8e-33 147.1 147 57.8
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 3.0e-33 146.4 104 71.2
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 3.0e-33 146.4 148 59.5
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 5.2e-33 145.6 144 59.7
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.5e-32 144.1 91 78.0
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 2.6e-32 143.3 147 53.7
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 7.4e-32 141.7 84 82.1
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 7.4e-32 141.7 146 58.9
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 9.7e-32 141.4 147 56.5
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.7e-31 140.6 85 80.0
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 2.8e-31 139.8 81 84.0
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.8e-31 139.8 148 54.7
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 8.2e-31 138.3 94 73.4
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 1.8e-30 137.1 151 53.0
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.8e-30 137.1 83 78.3
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 1.8e-30 137.1 93 75.3
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 1.8e-30 137.1 146 52.1
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 7.0e-30 135.2 145 54.5
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 1.2e-29 134.4 104 68.3
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.6e-29 134.0 137 54.7
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 1.6e-29 134.0 110 64.5
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.6e-29 133.3 145 53.8
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 3.5e-29 132.9 80 80.0
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 3.5e-29 132.9 85 72.9
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 4.5e-29 132.5 149 54.4
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 4.5e-29 132.5 97 68.0
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 4.5e-29 132.5 111 65.8
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 4.5e-29 132.5 85 74.1
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 5.9e-29 132.1 136 52.9
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 7.7e-29 131.7 115 60.9
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.0e-28 131.3 83 78.3
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.0e-28 131.3 84 71.4
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.0e-28 131.3 114 59.6
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 1.0e-28 131.3 85 72.9
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.3e-28 131.0 83 73.5
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.7e-28 130.6 80 76.2
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.9e-28 129.8 93 66.7
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 2.9e-28 129.8 91 69.2
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.8e-28 129.4 146 50.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 6.5e-28 128.6 159 49.1
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 8.5e-28 128.3 127 53.5
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 1.5e-27 127.5 93 71.0
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.9e-27 127.1 154 51.3
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 1.9e-27 127.1 80 77.5
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 3.2e-27 126.3 91 67.0
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 3.2e-27 126.3 144 51.4
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 4.2e-27 125.9 101 65.3
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 9.4e-27 124.8 91 67.0
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.2e-26 124.4 89 66.3
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.2e-26 124.4 91 70.3
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 2.1e-26 123.6 93 64.5
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 2.1e-26 123.6 80 76.2
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 2.1e-26 123.6 80 72.5
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 2.7e-26 123.2 94 66.0
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 3.6e-26 122.9 152 52.0
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 4.7e-26 122.5 99 62.6
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 6.1e-26 122.1 91 64.8
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 6.1e-26 122.1 91 64.8
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 6.1e-26 122.1 91 64.8
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 6.1e-26 122.1 91 64.8
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 8.0e-26 121.7 105 60.0
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.0e-25 121.3 74 81.1
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.4e-25 120.9 127 56.7
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 2.3e-25 120.2 89 64.0
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 5.2e-25 119.0 92 69.6
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 2.0e-24 117.1 88 65.9
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.3e-23 114.4 78 70.5
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 1.3e-23 114.4 71 74.6
Sabra19G0050600 Salix brachista HOM05D005516 ORTHO05D006713 1.3e-23 114.4 207 42.5
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 6.3e-23 112.1 132 50.0
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 1.1e-22 111.3 124 51.6
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.1e-22 111.3 92 59.8
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 1.1e-22 111.3 78 67.9
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 1.1e-22 111.3 132 48.5
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 3.1e-22 109.8 149 47.7
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 5.3e-22 109.0 130 49.2
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 9.1e-22 108.2 136 49.3
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 3.5e-21 106.3 62 83.9
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 5.9e-21 105.5 85 65.9
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 5.9e-21 105.5 114 50.0
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 7.7e-21 105.1 126 51.6
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 2.2e-20 103.6 73 72.6
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 6.5e-20 102.1 81 67.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.5e-19 100.9 95 53.7
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 8.0e-18 95.1 78 56.4
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.3e-17 93.6 60 71.7
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 8.8e-17 91.7 61 67.2
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.8e-16 88.2 59 67.8
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.8e-16 88.2 59 67.8
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 4.8e-15 85.9 61 68.9
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.8e-14 84.0 56 69.6
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 2.0e-13 80.5 68 60.3
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 2.0e-13 80.5 68 60.3
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.5e-13 79.7 88 51.1
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.5e-11 74.3 72 62.5
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 8.8e-09 65.1 46 63.0
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 7.5e-08 62.0 50 60.0
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 7.0e-06 55.5 115 33.9


User provided reference genes

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