Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 6.4e-171 604.0 303 100.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.0e-128 462.2 309 80.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.9e-107 392.5 292 70.9
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 6.1e-97 358.2 309 62.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 7.5e-95 351.3 309 60.2
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 4.9e-94 348.6 310 61.3
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.8e-93 346.7 309 60.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 4.1e-93 345.5 309 59.2
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.5e-92 342.4 311 61.1
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 7.8e-92 341.3 313 58.5
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.0e-91 340.9 310 59.0
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.9e-91 339.3 309 59.2
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 5.0e-91 338.6 311 59.5
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 5.0e-91 338.6 309 60.2
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 6.6e-91 338.2 309 60.5
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 8.6e-91 337.8 313 58.5
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 3.3e-90 335.9 309 60.5
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 4.3e-90 335.5 311 58.5
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 4.3e-90 335.5 310 60.3
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 5.6e-90 335.1 313 58.5
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 9.5e-90 334.3 311 59.2
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 9.5e-90 334.3 311 58.5
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.8e-88 330.1 311 58.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 6.8e-88 328.2 306 56.5
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.5e-87 327.0 310 58.4
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 7.5e-87 324.7 310 56.8
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 7.5e-87 324.7 310 57.1
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 9.8e-87 324.3 309 57.3
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 4.9e-86 322.0 311 56.6
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.9e-86 322.0 309 56.6
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 6.4e-86 321.6 309 55.3
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.4e-85 319.7 315 56.2
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 3.2e-85 319.3 310 57.1
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.2e-84 317.4 311 56.9
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.7e-84 316.2 310 56.1
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 7.8e-84 314.7 315 54.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.3e-83 313.9 310 55.5
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 3.0e-83 312.8 314 57.0
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.0e-83 312.8 312 56.4
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 3.9e-83 312.4 309 57.6
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.1e-82 310.8 310 56.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.9e-82 310.1 277 60.6
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 3.3e-82 309.3 277 60.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.1e-81 306.6 279 60.6
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 3.6e-81 305.8 322 55.3
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 8.0e-81 304.7 310 54.2
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.1e-80 302.8 309 55.3
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.8e-80 301.6 309 55.3
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 6.8e-80 301.6 309 52.1
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 6.8e-80 301.6 310 53.5
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.5e-79 300.4 312 52.6
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 9.8e-79 297.7 311 54.0
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.3e-78 297.4 310 53.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 1.7e-78 297.0 277 59.6
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.7e-78 297.0 319 52.0
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 2.9e-78 296.2 313 53.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 2.9e-78 296.2 313 53.0
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.9e-78 296.2 290 56.2
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 8.3e-78 294.7 313 54.0
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 8.3e-78 294.7 313 53.0
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 8.3e-78 294.7 268 59.3
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 1.9e-77 293.5 316 52.8
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 4.1e-77 292.4 310 53.5
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 5.4e-77 292.0 313 53.7
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 7.0e-77 291.6 313 53.4
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 7.0e-77 291.6 319 51.1
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 7.0e-77 291.6 322 52.5
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 9.2e-77 291.2 313 53.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 9.2e-77 291.2 310 51.6
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 9.2e-77 291.2 323 52.9
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.2e-76 290.8 275 56.4
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 3.5e-76 289.3 307 54.4
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 6.0e-76 288.5 297 54.5
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.3e-75 287.3 312 52.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-75 287.3 311 54.0
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 1.3e-75 287.3 297 54.5
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 2.3e-75 286.6 287 56.8
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.0e-75 286.2 262 58.4
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 8.6e-75 284.6 300 54.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 3.3e-74 282.7 313 51.1
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 5.6e-74 282.0 311 51.4
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.5e-74 281.2 258 59.7
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.1e-73 280.0 261 56.7
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.8e-73 279.6 289 54.0
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.8e-72 276.9 291 53.3
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 6.8e-72 275.0 307 49.2
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.2e-71 274.2 280 55.7
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.5e-71 273.9 297 51.9
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.5e-71 273.9 307 50.8
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 4.4e-71 272.3 300 52.3
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 3.2e-69 266.2 292 51.7
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-68 263.5 278 53.6
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.7e-68 263.1 244 58.2
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.0e-67 261.2 296 51.0
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 8.1e-65 251.5 240 57.1
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.2e-63 247.7 245 57.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 9.9e-63 244.6 313 46.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.3e-62 244.2 292 50.3
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.3e-59 233.4 294 43.2
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 7.3e-58 228.4 182 64.8
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 4.7e-57 225.7 254 46.9
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.0e-55 220.3 181 61.3
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 7.6e-55 218.4 307 43.0
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.2e-54 216.9 283 46.3
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 3.8e-54 216.1 173 64.2
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 6.4e-54 215.3 245 46.9
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.9e-51 206.1 249 44.6
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 5.3e-48 195.7 284 40.5
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 2.1e-44 183.7 123 72.4
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 2.7e-44 183.3 256 40.6
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 3.5e-44 183.0 132 75.0
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-43 181.0 254 45.3
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.8e-43 180.6 249 40.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.8e-43 180.6 186 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 4.8e-41 172.6 278 37.4
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 4.5e-39 166.0 167 52.7
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.7e-38 164.1 282 38.3
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 6.5e-30 135.6 154 49.4
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.1e-28 130.6 240 37.1
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 6.0e-28 129.0 82 72.0
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 6.0e-28 129.0 82 70.7
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 5.1e-27 125.9 82 70.7
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 8.7e-27 125.2 75 80.0
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 4.8e-25 119.4 83 69.9
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-22 110.9 125 48.0
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 9.4e-21 105.1 246 29.3
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.6e-20 102.8 103 55.3
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.6e-20 102.8 103 55.3
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 4.6e-20 102.8 188 35.1
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 6.1e-20 102.4 103 54.4
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.8e-19 100.9 103 54.4
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.3e-19 100.5 103 54.4
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 5.9e-15 85.9 105 48.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 7.9e-12 75.5 169 28.4
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.8e-11 74.3 67 53.7
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-10 71.2 52 67.3
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.5e-10 71.2 89 46.1
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 9.7e-10 68.6 75 52.0
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.7e-09 67.8 220 25.5
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.2e-09 67.4 49 63.3


User provided reference genes

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