Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 2338.9 1196 100.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 2100.5 1166 91.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1811.2 1166 78.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1772.3 1168 75.9
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1772.3 1167 76.3
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1768.4 1167 76.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1760.0 1161 75.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1731.1 1165 74.8
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1730.3 1186 74.3
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1721.4 1162 75.0
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1719.1 1160 75.3
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1711.0 1181 72.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1709.5 1169 73.7
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1706.0 1152 74.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1701.8 1173 73.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1697.9 1152 73.7
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1691.4 1170 72.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1688.7 1166 72.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1681.0 1167 72.9
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1677.5 1169 72.7
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1677.5 1181 71.8
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1674.8 1163 72.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1672.5 1161 72.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1672.1 1147 73.5
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1665.6 1162 71.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1659.4 1169 71.1
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1658.7 1163 72.7
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1657.5 1161 71.2
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1652.1 1188 70.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1647.9 1159 71.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1646.7 1188 69.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1645.9 1159 71.5
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1641.3 1129 73.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1639.8 1188 69.4
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1638.6 1188 69.3
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1637.1 1188 69.3
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1629.8 1167 71.2
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1628.2 1170 69.7
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1627.5 1198 68.7
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1626.7 1192 69.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1626.7 1159 70.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1622.4 1164 69.9
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1621.7 1185 69.0
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1163 70.5
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1608.6 1159 70.1
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1597.8 1167 68.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1597.4 1158 68.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1597.0 1186 67.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1595.9 1165 70.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1159 69.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1587.0 1166 68.6
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1586.2 1170 67.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1584.3 1168 67.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1182 67.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1125 70.7
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1561.2 1186 66.4
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1558.9 1184 65.3
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1165 67.6
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1549.6 1162 67.6
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1549.6 1158 67.9
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1547.7 1159 66.8
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1545.4 1166 66.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1542.7 1181 65.5
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1541.6 1181 65.5
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1539.2 1168 66.1
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1538.5 1187 65.2
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1536.5 1182 65.5
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1535.8 1159 67.5
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1534.2 1182 65.5
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1532.7 1126 68.5
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1531.2 1162 67.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1524.2 1183 64.8
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1523.8 1161 65.6
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1521.5 1162 66.3
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1519.6 1167 66.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1518.8 1168 67.7
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1518.1 1164 65.8
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1514.6 1159 65.1
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1513.0 1162 66.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1511.9 1185 64.0
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1511.5 1171 65.5
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1510.7 1159 67.5
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1506.9 1170 66.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1493.4 1174 64.3
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1489.6 1068 70.1
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1484.9 1156 64.4
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1476.8 1160 64.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1468.8 1153 64.7
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1454.1 991 74.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1448.3 1223 62.8
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1424.1 1027 69.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1415.6 1174 62.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1375.9 1031 66.7
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1360.9 1097 63.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1353.6 1249 58.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1312.7 1171 57.6
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1310.8 1141 59.0
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1307.0 1166 56.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1306.6 1182 59.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1250.0 1175 56.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1224.2 966 67.3
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1200.7 893 67.5
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1196.4 1030 59.7
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1182.2 803 73.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.6e-311 1073.2 814 67.9
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.3e-294 1016.9 1141 50.8
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 2.5e-263 912.9 633 72.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.3e-256 889.8 1191 41.2
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 3.3e-255 885.9 1194 41.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.3e-254 884.0 1184 41.5
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.9e-248 862.4 1177 44.7
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-239 833.6 1136 44.0
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.3e-235 820.8 1174 43.7
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-234 817.4 1136 43.4
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.4e-223 779.6 793 53.3
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.0e-219 768.1 1166 38.4
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 5.2e-216 755.7 990 45.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 6.4e-214 748.8 600 65.0
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 6.2e-209 732.3 1197 37.6
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.3e-202 708.8 633 58.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.5e-180 636.7 541 59.7
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 6.2e-169 599.4 492 66.3
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.6e-164 584.7 510 58.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-157 560.5 489 59.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.6e-148 531.6 384 69.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.6e-92 345.5 278 62.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.9e-81 307.4 268 57.8
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.9e-81 307.4 254 61.4
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.1e-80 306.2 1364 23.1
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.1e-77 296.2 210 69.5
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-77 296.2 212 69.8
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.5e-61 241.9 215 60.5
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.3e-54 218.8 433 33.0
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.0e-50 205.7 507 29.8
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.5e-42 179.5 109 82.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.6e-39 167.9 143 60.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.2e-33 149.1 1158 20.0
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.7e-20 105.1 85 63.5
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 4.7e-15 88.2 341 26.4
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 6.1e-15 87.8 93 59.1
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.8e-14 86.3 98 49.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.3e-13 82.0 123 40.7
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 7.5e-13 80.9 172 37.8
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.3e-12 80.1 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.3e-12 80.1 50 80.0
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 2.8e-12 79.0 108 49.1
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.2e-10 73.6 335 23.3
Sabra13G0031700 Salix brachista HOM05D004384 ORTHO05D037489 3.8e-09 68.6 43 81.4
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.5e-09 67.4 67 53.7
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 5.5e-08 64.7 182 27.5
Sabra13G0031500 Salix brachista HOM05D004384 ORTHO05D349000 8.0e-07 60.8 34 88.2
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 8.8e-06 57.4 36 72.2
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 8.8e-06 57.4 62 50.0


User provided reference genes

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